Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32460 233 / 8e-71 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT4G26930 219 / 1e-66 MYB ATMYB97 myb domain protein 97 (.1) AT3G11440 211 / 9e-62 MYB AtMYB65 myb domain protein 65 (.1) AT5G06100 207 / 4e-61 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT5G55020 205 / 8e-60 MYB ATMYB120 myb domain protein 120 (.1) AT2G26960 189 / 1e-54 MYB ATMYB81 myb domain protein 81 (.1) AT3G61250 155 / 2e-43 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT3G27810 153 / 2e-43 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT4G21440 154 / 1e-42 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 152 / 1e-42 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036000 [exp] 221 / 3e-65 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.003G189700 [exp] 221 / 3e-65 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.009G018700 [exp] 213 / 1e-62 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.001G224500 [exp] 211 / 5e-62 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.013G130900 [exp] 196 / 2e-55 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.012G140700 [exp] 157 / 4e-44 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.001G346600 [exp] 153 / 8e-44 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.004G033100 [exp] 157 / 2e-43 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.002G157600 [exp] 155 / 3e-43 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027189 [exp] 251 / 2e-76 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 243 / 2e-73 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10026787 [exp] 221 / 4e-66 AT3G11440 301 / 4e-96 myb domain protein 65 (.1) Lus10036103 [exp] 220 / 6e-66 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10040063 [exp] 214 / 1e-63 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10021539 [exp] 214 / 2e-62 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10008685 [exp] 212 / 6e-61 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10026142 [exp] 214 / 3e-60 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10030378 [exp] 154 / 6e-43 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10009522 [exp] 154 / 1e-42 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G228700.1 pacid=42779812 polypeptide=Potri.002G228700.1.p locus=Potri.002G228700 ID=Potri.002G228700.1.v4.1 annot-version=v4.1 ATGATGAGCAATAGGAACTGCAACAATATTGATAGAGTAGTAGTGATGGAGAGTGGACAGGCTACAGCTCCAAAAGGGTTCAATCAAGGCTTGAAAAAGG GGCCATGGACGGTAGCGGAAGATGCCATCTTGATAGAGTACGTGAAGAAACATGGAGAAGGAAATTGGAATTCTGTGCAAAAGAATTTCAGATTGATGAG GTGCGGCAAGAGTTGCAGGCTCAGATGGGCAAATCATTTGAGGCCTAATCTAAAAAAAGGTTCTTTTACACCCGATGAAGAGAAAATCATCATCGAACTT CATGCCAAACATGGTAATAAATGGGCTCGAATGGCCTCTCAGTTACCCGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACCAGAATGAAAAGAC ATCAAAGAGCTGGTCTGCCTATATACCCCCAAGATTTCCAAGCGAAAACAGCTGCGGTTCGCTTTCACCACCAGGAAGGCCGACGAACACAACCCAACTC TACCTCACTCTCCTCATCTCCTTACAATCTCTGTTTTCCACCCCTTGATCCCATCAATAGTTTCGCAACTCCCTTGAACCCTTTGCAGAATCATCTTAGT CCACTTGCATTCTACTCCAATCCGAGCCATCAGTTAAAACTGTTTGCTAATACCAACAGTAACGATGGCTGTTTACCTCTGTCTTTGCCTCCTGTTTCGT CGTATCAGCAATCACCTCTTTCTACAAATCTATTCAGTCAAAACCCCACTAGGCAAGCAGCCCCGATAAATACACCACCATCAGTACTGTTCTACAATGA TGCCGATATGGAAAGCAATATGAGTTTTACTTCACTTATAATGGGGGGTCAAGTTCAGCCAATTGGCTTTATTCCTTCAGGCCAAACACCACCAGGGCCG ACAACTTCTTGGGGTGGTGGTGCTTGTTTCGAGGAGGCATCCAACAAAAGCAACAACAATGGCTACAGTAACAGTGAAACTAGCCAACAAGGAATGGCAG GCAATATGAACAATAGCGGTTTGTTGGATGCTTTGCTGCAGGAGGCTAAGACTATATCTTTCAAAGGGAAATCAAATAGTGATGACTTGCTGCCGGCATC TAACGAAGGGAAACGTGCGATGGATAGTACTGTAAAGGAGGAAGGTGAAAAACTGTGGGATGATTTGAGCTCGTCTCAATCCTCAAATATATGGACAAAA CCAAGCGAGGAAGCAGCTGACCAGGAGTTGAATTCCATGGATGATGACTTCATCAGCCTGCTTAATAACTTCCCATCGTCGGAGCCACTCCCAGAGTGGT ATCGTCAAAGCAGAAATGAACGCAATTCCAATAGAATGCCATACAGTGGGCTTAATATTGTTGATGACAACAGAGACCCCGACGTTAAGGAAGATGCTTC ACTCACTCGTGCTTCCAACACAGAAGCAGTTCCAAACCGTGGAAGGGCCCTGGTTTCCTGCCATTGGAACAACATGCCTGGCATCTGTTAA
AA sequence Show only first row Show all	>Potri.002G228700.1 pacid=42779812 polypeptide=Potri.002G228700.1.p locus=Potri.002G228700 ID=Potri.002G228700.1.v4.1 annot-version=v4.1 MMSNRNCNNIDRVVVMESGQATAPKGFNQGLKKGPWTVAEDAILIEYVKKHGEGNWNSVQKNFRLMRCGKSCRLRWANHLRPNLKKGSFTPDEEKIIIEL HAKHGNKWARMASQLPGRTDNEIKNYWNTRMKRHQRAGLPIYPQDFQAKTAAVRFHHQEGRRTQPNSTSLSSSPYNLCFPPLDPINSFATPLNPLQNHLS PLAFYSNPSHQLKLFANTNSNDGCLPLSLPPVSSYQQSPLSTNLFSQNPTRQAAPINTPPSVLFYNDADMESNMSFTSLIMGGQVQPIGFIPSGQTPPGP TTSWGGGACFEEASNKSNNNGYSNSETSQQGMAGNMNNSGLLDALLQEAKTISFKGKSNSDDLLPASNEGKRAMDSTVKEEGEKLWDDLSSSQSSNIWTK PSEEAADQELNSMDDDFISLLNNFPSSEPLPEWYRQSRNERNSNRMPYSGLNIVDDNRDPDVKEDASLTRASNTEAVPNRGRALVSCHWNNMPGIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Potri.002G228700 [exp]	0	1
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.008G077700 [exp]	4.89	0.6849	Pt-PNFT3.4
					Potri.006G226200 [exp]	4.89	0.6847
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.018G098300 [exp]	11.66	0.6178	Pt-ATCHX3.2
					Potri.006G152300 [exp]	16.49	0.5967
					Potri.002G025701 [exp]	19.59	0.5804
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.003G104600 [exp]	23.23	0.6166
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	25.39	0.6024
AT3G05675			BTB/POZ domain-containing prot...		Potri.016G069566 [exp]	27.56	0.4608
					Potri.002G118950 [exp]	30.39	0.5661
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.007G138400 [exp]	33.46	0.5729

Compare expression of checked genes

Potri.002G228700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.