Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32415 1050 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT1G54440 208 / 3e-57 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT5G35910 208 / 7e-56 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) AT5G24340 52 / 1e-06 3'-5' exonuclease domain-containing protein (.1) AT2G25910 48 / 2e-05 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2) AT1G56310 48 / 4e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038701 [exp] 206 / 5e-55 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.013G062800 [exp] 201 / 2e-53 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.015G009500 [exp] 51 / 3e-06 AT5G24340 679 / 0.0 3'-5' exonuclease domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015114 [exp] 1070 / 0 AT2G32415 1089 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10031563 [exp] 993 / 0 AT2G32415 1039 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10039170 [exp] 207 / 2e-55 AT5G35910 828 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10005691 [exp] 202 / 2e-53 AT5G35910 814 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020293 [exp] 184 / 5e-48 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020300 [exp] 149 / 9e-37 AT5G35910 477 / 1e-157 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10010930 [exp] 48 / 5e-05 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022376 [exp] 47 / 6e-05 AT5G24340 544 / 0.0 3'-5' exonuclease domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [poplar] [flax] HRDC-like PF00570 [poplar] [flax] HRDC HRDC domain CL0219 [poplar] [flax] RNase_H PF01612 [poplar] [flax] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Potri.002G229000.3 pacid=42777157 polypeptide=Potri.002G229000.3.p locus=Potri.002G229000 ID=Potri.002G229000.3.v4.1 annot-version=v4.1 ATGGAATACAAGGACAAATTAAAAATCGCAGCATTGACCATCGCTTCTCTAGCAGCACTCTCTTCTGTTATTTTCCTAGTAACCTCCTCCTCCAAGCATT ACCGCCGGAGACGACGAAAGCAGCAGCAGCAGCAAAAACAAAGCTCATCGTGCTACTTACAATCCCATCAGAAACCACAGCTTTCTTTCAAACGCGTCTT GCTTGATAACTCCTTCTCTCAATTCAAGCACTTAAATCTCCATGCAGCGAGCTCATCGAATTTTCATCCATATGAAGCGGATATTAAAGCTTTGATAGAA AATCCTGAGTCGTTAGAAGACTATTATAGTGATCATCAGAAAATGAGTGAATTTTTCTCTTATGTTTGGATCGAGACGGAAACTCAATTGAAAGACTTAG CTCATACATTGAGCAAACACAAGGTTTTTGCTGTCGATACGGAGCAGCATAGCCTCCGCTCTTTTCTCGGTTTCACTGCTCTAATTCAGATATCTACTCG AAACGAAGATTATTTGGTGGATACGATTGCATTACATGATGTAATGGGTGTTCTTGCCCCTGTTTTCGCTGATCCAACTATTTGTAAGGTGTTTCACGGG GCAGATAACGATGTTCTCTGGCTGCAGAGAGACTTCCATATATATGTTGTTAATTTGTTTGATACTGCGAAGGCGTGCGAAGTGTTGTCAAAACCTCAGA AATCATTAGCATACTTGCTCGAAACTTATTGTGGTGTAGCCACAAACAAATTGCTACAGCGTGAAGATTGGAGGCAACGCCCACTATCAGCAGAAATGCT AGAATATGCTCAAACAGATGCACACTATCTACTGTATATTGCAGGTTGTTTAATAGCTGAGCTCAAACTACAGGACAGAGATAACTCAAACTGTCCCAAT GACAAATTGGATTTTGTTCTGGAGGCTAGACGTCGTTCAAACATGATTTGTCTTCAACTCTATGCTAAAGAGGTTGAAGCCTTTCCTGGTGAGTCTGCTG CATCATCAATTTTTTCCCGTCATTTGAATGGTCAAAGAGGGTCATCAATTTCATATGAGACACAGGATCTTGTGAGATGTTTTTGCACATGGAGGGATCT AATGGCTCGTGTTCATGATGAGAGCTTGAGATATGTATTATCAGATCAGGCTATTGTCCTTCTTGCAGTCAAAGTTCCCACAACTCCTGAAGAAATATTT GATACCATAGCAGAAGCTGATTTGAATGTGGAAAATGTGAATTTAAATTCTTCTCTCCCATCTCCATCCCCTGTTGTTTGCAGTCATTTGGATGATCTCT ATTGCTTGATCAAGGACAAAAAAAGCAACGCCGATGAAGTTCTCCTTCAAATTCTTCAAAATTGCCTGGGTCCCAATGGGAGTTGTCCATTGTCTGTTTA TAACTATGCATTACTGATTAACTGTGACCTAATAATGAAAAATAGATTAGTTTCCAAACAGAGTCCGGTTATAAATTCAAAGCAAGTTGCTCGGAAGGCT TCAAGAGAACTATTTGTTCAAAAGTTCTCCTGTAAATCTCCAGTGTATCATAACTGTAGGATCTATGCAAATGATGGGCGTTTGCTTTGTTATTGTGATC GGAGAAAGCTTGAATGGTATCTCCGTCGAGATTTGGCAAAACTTGTTGATGATGATGCTCTTGCCATAACGCTTCTTTTTGAACCAAAAGGTCGTCCAGA GGATGAAGGGAATGATTTTTATATCCAAAGTAAGAAAAATATATGTGTTGGCTGTGGTGAAGGAAGTCATTACTTGCGCTATCGAATAATCCCCTCTTGT TATAGAATGCACTTCCCTGAGCATTTGAAAAGTCATCGTTCTCATGATATTGTCCTCCTTTGTGTGGACTGCCATGAACTTGCTCATGCTGCTGCTGAAA AGTACAAAAAACAGGTTGCTAAAGAATTTGGAATTCCACTTTTCGTTCGTAAAGTAGTTGATTCTAAAGAAATTCCAGTTATAAGTGAGTCATCTTCATC AGTAATGAATGTTGAGGAGACAGGGGTATCTCCATTACATTTGCGCACAGCTGCTATGGCTCTTTTACGCCATGGACAAAGAATGCCACTCAAGCGCCGC GAAGAACTGACACAGATTGTGATGCAATATTATGGAGGAAGGGAGATATCCGAGGAAGATTTGGAAAGAGCTCTGCTGGTTGGCATGAGTCCTCATGAAA GAAGGCGATTTGAGAAGAAGAGAAGGTTTTCATCAAAACATTCTACTGAGGTTATCCTTTTGGACAAAGAACAGATGGGTGCAGCTTATACAATGGCTGT ATCTACCACCGGAAATTCACTGGAAAAGGCTGTTACTAAAGATGGTTTAGAAACTACTGAAATGGAATCAACAGGTACAAAAGAACTAGACTATTTCATG GTAAAAGATACTATTTCTGACAAGGAAATGAATTCAGATGAAAATGAAGCTTCTGATACAAAAGATGAATATGTTGGAAACGATGATGATAATTGTGAAG GAGGCCCCTCAAATGGAACAGCTAGAAATGATGAAAGTGCTCCACATAAAAATAATTCGAAATTATCTCTGTTAGGACATGGACCACATGGAAAACAAGT TGTGGATCATATATTAGAGGAATATGGCGAGGATGGCATTCGGCAATTTTGTCAGAGATGGAGACAAGTTTTTGTTGAAGCAGTTCATCCTCGTTTCTTA CCTGCTGGCTGGGATGTAATGCACAGTGGCAGAAGAGACTTTGGTGAATTTAGCGTGTACAATCCTACCAATAAAGCACCTGCTGCTAACACTTGA
AA sequence Show only first row Show all	>Potri.002G229000.3 pacid=42777157 polypeptide=Potri.002G229000.3.p locus=Potri.002G229000 ID=Potri.002G229000.3.v4.1 annot-version=v4.1 MEYKDKLKIAALTIASLAALSSVIFLVTSSSKHYRRRRRKQQQQQKQSSSCYLQSHQKPQLSFKRVLLDNSFSQFKHLNLHAASSSNFHPYEADIKALIE NPESLEDYYSDHQKMSEFFSYVWIETETQLKDLAHTLSKHKVFAVDTEQHSLRSFLGFTALIQISTRNEDYLVDTIALHDVMGVLAPVFADPTICKVFHG ADNDVLWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKLLQREDWRQRPLSAEMLEYAQTDAHYLLYIAGCLIAELKLQDRDNSNCPN DKLDFVLEARRRSNMICLQLYAKEVEAFPGESAASSIFSRHLNGQRGSSISYETQDLVRCFCTWRDLMARVHDESLRYVLSDQAIVLLAVKVPTTPEEIF DTIAEADLNVENVNLNSSLPSPSPVVCSHLDDLYCLIKDKKSNADEVLLQILQNCLGPNGSCPLSVYNYALLINCDLIMKNRLVSKQSPVINSKQVARKA SRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRDLAKLVDDDALAITLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGSHYLRYRIIPSC YRMHFPEHLKSHRSHDIVLLCVDCHELAHAAAEKYKKQVAKEFGIPLFVRKVVDSKEIPVISESSSSVMNVEETGVSPLHLRTAAMALLRHGQRMPLKRR EELTQIVMQYYGGREISEEDLERALLVGMSPHERRRFEKKRRFSSKHSTEVILLDKEQMGAAYTMAVSTTGNSLEKAVTKDGLETTEMESTGTKELDYFM VKDTISDKEMNSDENEASDTKDEYVGNDDDNCEGGPSNGTARNDESAPHKNNSKLSLLGHGPHGKQVVDHILEEYGEDGIRQFCQRWRQVFVEAVHPRFL PAGWDVMHSGRRDFGEFSVYNPTNKAPAANT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32415			Polynucleotidyl transferase, r...		Potri.002G229000 [exp]	0	1
AT3G09320			DHHC-type zinc finger family p...		Potri.016G100200 [exp]	2.44	0.8061
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.008G022300 [exp]	7.07	0.7520
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.015G071400 [exp]	10.39	0.7598
AT4G14290			alpha/beta-Hydrolases superfam...		Potri.008G200400 [exp]	10.58	0.6852
AT5G11850			Protein kinase superfamily pro...		Potri.006G229400 [exp]	10.90	0.7449
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Potri.010G152200 [exp]	14.76	0.7655
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	17.14	0.7507
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Potri.002G139200 [exp]	17.77	0.7585
AT2G47020			Peptide chain release factor 1...		Potri.014G114000 [exp]	23.02	0.7392
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	31.12	0.7227

Compare expression of checked genes

Potri.002G229000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.