Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05180 884 / 0 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G32410 829 / 0 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT3G25880 92 / 7e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G30110 66 / 5e-11 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT4G24940 64 / 6e-11 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT2G21470 63 / 3e-10 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G50580 61 / 4e-10 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT5G50680 61 / 4e-10 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2) AT5G55130 60 / 2e-09 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT5G06460 60 / 4e-09 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153500 [exp] 1011 / 0 AT1G05180 873 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G100800 [exp] 71 / 5e-13 AT4G24940 490 / 4e-176 SUMO-activating enzyme 1A (.1) Potri.015G099000 [exp] 63 / 1e-10 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1) Potri.001G280600 [exp] 64 / 2e-10 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 63 / 3e-10 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 63 / 4e-10 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G355800 [exp] 62 / 4e-10 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.009G120200 [exp] 62 / 7e-10 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 60 / 3e-09 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015115 [exp] 916 / 0 AT1G05180 860 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031562 [exp] 821 / 0 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10028846 [exp] 71 / 3e-13 AT4G24940 475 / 7e-170 SUMO-activating enzyme 1A (.1) Lus10008977 [exp] 70 / 9e-13 AT4G24940 473 / 1e-168 SUMO-activating enzyme 1A (.1) Lus10031292 [exp] 66 / 6e-11 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10022666 [exp] 64 / 2e-10 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10012507 [exp] 63 / 5e-10 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10017479 [exp] 61 / 2e-09 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10022510 [exp] 60 / 3e-09 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10000697 [exp] 60 / 3e-09 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Potri.002G229100.1 pacid=42779315 polypeptide=Potri.002G229100.1.p locus=Potri.002G229100 ID=Potri.002G229100.1.v4.1 annot-version=v4.1 ATGGCGGAGCCAAAAACCAAATACGATCGCCAACTCAGGATATGGGGTGAGCAAGGACAGACTGCCCTAGAAAAAGCCAGCATTTGTTTGCTTAATTGCG GTCCTACCGGTTCCGAGACACTGAAAAATCTTGTACTTGGTGGAGTTGGATCCATCACTGTGATTGATGGGTCTAAAGTTGAACTGGGTGACCTTGGAAA TAATTTCATGGTGGATGAATCATGTGTTGGGCAATCCAAGGCGAAATGTGTGTGCACGTTTCTTCAAGAGTTGAATGATGCTGTTAAAGCCAAGTTCATA GAAGAGTATCCTGAGGCATTGGTTGACTCTAATCCCTCCTTCTTTTCGCAGTTTACGCTTGTTGTAGCTACTCAGTTGGCTGAAGACTCTATGGTGAAGC TTGAGAAAATCTGCAGGGAGGCAAATGTTTTGTTAATTTTTGCACGCTCCTATGGCCTTACTGGGTTTGTCAGAAATAGTGTGAAGGAACATGCAGTGAT TGAGTCAAAGCCTGATCATTTCTTGGATGACCTACGGTTAAATAACCCATGGCCTGAGCTCAAAAGGTTTGCTGAAAGTATTGATTTAAAGGTGGCAGAT CCTGTTGCCCATAAGCACACACCTTATGTTGTCATTCTTGTCAAGATGGCTGAGGAGTGGGCCAAAGCTCATGGTGGTGCCCTGCCATCAACTAGGGATG AGAAGAAAGAATTCAAGGAGCTCTTAAAAGCAGGAATGGTTGCAATTGATGAAGACAACTATAAAGAAGCTATTGAGGCCTCCTTTAAAGTCTTTGCTCC TCGAGGAATCAGTTCTGATCTGCTGCAGATAATCCATGACAGCTGCAGTGAAGTTGATTCTAATTCATCCGACTTTTGGGTGATGGTTGCTGCATTGAAG GAGTTCATTGTGAATGAAGGTGGAGGGGAGGCGCCTCTTGAAGGTTCAATACCAGATATGACATCTTCAACTGAGCTTTATGTAAATTTGCAGAAGATCT ACCTAGCAAAAGCAGAGGCTGATTTTCTTGTTATTCAGCAAAGAGTTAAGAGTATTTTGAAGAGAATTGGCAGAGATCCAGATAGCATCTCAAAGGCAGT GATTAAAAGCTTCTGTAAAAATGCAAGAAAACTAAAGGTTTGCAGGTATCGACTTATTGAAGATGAGTTCAGCAATCCTGCAGTACCAGAGGTACAGAAG TATTTAACTGATGAGGAATACAGTGTTGCCATGGGGTTTTACATCCTGCTTCGAGCTGTTGACCGCTTTTCTGCTAATTATAATAGTTTCCCTGGGCAAT TTGAAGGGGAAATGGACGAGGATATATCTCGATTGAAAACTGCAGTTGTTGGTCTACTTAACGACTTGGGTTGCAATGGCTCAACTGTAACTGAGGACCT TATCAATGAAATGTGCCGGTTTGGTGCTTCTGAACTTCATGCTGTTGCTGCCTTTATCGGGGGAATTGCATCGCAAGAAGTGATCAAGCTCATAACAAAA CAATTTGTTCCCATGGTGGGAACTTTCATATTCAACGGCATTGATCAGAAGTCTCAACTATTGGTACTGTAG
AA sequence Show only first row Show all	>Potri.002G229100.1 pacid=42779315 polypeptide=Potri.002G229100.1.p locus=Potri.002G229100 ID=Potri.002G229100.1.v4.1 annot-version=v4.1 MAEPKTKYDRQLRIWGEQGQTALEKASICLLNCGPTGSETLKNLVLGGVGSITVIDGSKVELGDLGNNFMVDESCVGQSKAKCVCTFLQELNDAVKAKFI EEYPEALVDSNPSFFSQFTLVVATQLAEDSMVKLEKICREANVLLIFARSYGLTGFVRNSVKEHAVIESKPDHFLDDLRLNNPWPELKRFAESIDLKVAD PVAHKHTPYVVILVKMAEEWAKAHGGALPSTRDEKKEFKELLKAGMVAIDEDNYKEAIEASFKVFAPRGISSDLLQIIHDSCSEVDSNSSDFWVMVAALK EFIVNEGGGEAPLEGSIPDMTSSTELYVNLQKIYLAKAEADFLVIQQRVKSILKRIGRDPDSISKAVIKSFCKNARKLKVCRYRLIEDEFSNPAVPEVQK YLTDEEYSVAMGFYILLRAVDRFSANYNSFPGQFEGEMDEDISRLKTAVVGLLNDLGCNGSTVTEDLINEMCRFGASELHAVAAFIGGIASQEVIKLITK QFVPMVGTFIFNGIDQKSQLLVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.002G229100 [exp]	0	1
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005100 [exp]	2.00	0.7135
AT3G18060			transducin family protein / WD...		Potri.012G049200 [exp]	2.23	0.6939
AT3G24570			Peroxisomal membrane 22 kDa (M...		Potri.006G242700 [exp]	3.46	0.6910
AT1G71310		RAD52-1B.2, RAD...	radiation sensitive 51-1, coba...		Potri.019G068500 [exp]	8.06	0.7203
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.008G103400 [exp]	8.12	0.7078
AT5G41760			Nucleotide-sugar transporter f...		Potri.003G136800 [exp]	8.12	0.6595
AT1G09870			histidine acid phosphatase fam...		Potri.008G072600 [exp]	9.79	0.6495
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169400 [exp]	11.22	0.6486
AT3G55550			Concanavalin A-like lectin pro...		Potri.006G144850 [exp]	15.87	0.6726
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.005G098800 [exp]	17.66	0.6225

Compare expression of checked genes

Potri.002G229100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.