Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05710 1675 / 0 ACO3 aconitase 3 (.1) AT4G26970 1580 / 0 ACO2 aconitase 2 (.1) AT4G35830 1558 / 0 ACO1 aconitase 1 (.1.2) AT5G54950 93 / 8e-23 Aconitase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153400 [exp] 1842 / 0 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.005G108100 [exp] 1583 / 0 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.007G060900 [exp] 1581 / 0 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.015G130201 [exp] 130 / 3e-35 AT4G35830 145 / 2e-41 aconitase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015116 [exp] 1713 / 0 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 1704 / 0 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 1691 / 0 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 1643 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10040070 [exp] 1600 / 0 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10028405 [exp] 1575 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10041858 [exp] 1571 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10021533 [exp] 1497 / 0 AT2G05710 1523 / 0.0 aconitase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00330 [poplar] [flax] Aconitase Aconitase family (aconitate hydratase) CL0364 [poplar] [flax] Leu-IlvD PF00694 [poplar] [flax] Aconitase_C Aconitase C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G229200.5 pacid=42776779 polypeptide=Potri.002G229200.5.p locus=Potri.002G229200 ID=Potri.002G229200.5.v4.1 annot-version=v4.1 ATGCATATAACAGGCTTAGGATCAGCCTCTTCAATTCTTAGGGCTTCTAGGGCTAGGTTTCCTCCTCCCGTCTCCAAAACTTCCATTCTCTATTCTCCTA AATTTTCTCCTTCTTATTTGACCACTAATAACCAACTCCGATCTTTGAGCTTCTCCTCCGCTGTTCGATCTCTCCGCTGCTCTTACCCTCGCTGGAGCCA CGGTGTCGATTGGCGCTCTCCTGCTACTCTTCGCCACCAGATCAGAGCCGTTGCTCCCGTTGTCGAACGCTTCCAGCGAAAGATCGCTACTATGGCTCAT GAACATCCTTTCAAGGGGATTTTCACCAGTCTCCCCAAGCCAGGAGGCGGCGAGTTCGGAAAGTTCTATAGCTTGCCTGCTCTTAATGATCCAAGGATCG AGAAACTGCCCTATTCCATCAGAATTCTTCTGGAATCTGCTATTCGTAATTGTGATAACTTCCAAGTAACAAAGGGTGATGTTGAGAAGATCATTGACTG GGAAAACACAGCTCCGAAACTAGTTGAGATTCCGTTCAAGCCTGCTCGTGTTCTTTTGCAGGTATGTCTGAAGCTTGAGAAGGATTTTACTGGAGTACCA GTTGTTGTTGATCTTGCTTCTATGCGGGATGCTATGGCTCAACTTGGCGGTGATTCCAACAAGATCAATCCTTTGGTTCCTGTAGATCTTGTCATTGATC ATTCAGTTCAAGTTGACGTGGCAAGATCAGAAAATGCAGTGCAGGCAAACATGGAGCTTGAATTTCATAGGAACAAGGAAAGATTTGCCTTTCTTAAATG GGGTTCCACTGCTTTCCAAAATATGCTTGTGGTTCCTCCAGGTTCTGGTATTGTTCATCAGGTGAATCTTGAATATCTTGGACGCGTTGTTTTCAACACT GATGGTGTTCTCTACCCTGATAGTGTGGTTGGAACTGATTCTCATACAACCATGATTGATGGGCTAGGAGTAGCTGGCTGGGGAGTTGGAGGTATTGAAG CAGAAGCTGCAATGCTTGGCCAGCCCATGAGCATGGTGTTGCCTGGCGTTGTTGGGTTCAAGTTAAATGGAAAGTTACACAATGGTGTCACAGCTACTGA CTTGGTTTTGACGGTGACTCAAATGCTGAGGAAGCATGGTGTTGTGGGAAAGTTTGTTGAGTTTTATGGTGATGGAATGAGTAAGCTATCATTAGCAGAC AGGGCTACTATAGCTAACATGTCTCCTGAGTATGGTGCAACTATGGGGTTCTTCCCAGTGGATCATGTTACATTACAATATCTCAAATTGACTGGAAGGA GTGATGAAACTGTGGCAATGATAGAAGCATATCTCCGTGCAAACAAAATGTTTGTTGACTATAACGAGCCCCAACCAGAAAGAGTGTACTCAGCCTATCT ACAATTGGACCTTGCGGATGTTGAGCCCTGCATTTCTGGACCAAAGAGGCCACATGATCGTGTTCCATTAAAAGAAATGAAGGCTGATTGGCATGCTTGT CTCAATAACAAAGTTGGATTTAAGGGTTTTGCTGTACCAAAAGAGGCACAGGACAAAGTGGCAAAGTTTTCATTCCATGGACAGCCAGCAGAGCTGAAGC ATGGTAGTGTTGTGATTGCTGCAATCACAAGCTGTACCAATACATCAAATCCCAGTGTCATGCTAGGTGCTGGTCTTGTTGCTAAGAAGGCTTGTGAACT TGGTTTAAAGGTAAAGCCATGGATAAAAACAAGTCTAGCCCCAGGCTCCGGAGTTGTTACAAAATATTTACTCCAAAGTGGGCTGCAAAAATATTTGAAT GAGCAGGGCTTCAATATTGTTGGATATGGGTGCACAACATGCATTGGAAATTCTGGGGATTTGGATGAATCTGTTGGCGCTGTTATTACAGAAAATGACA TTCTTGCAGCAGCTGTGCTTTCTGGTAACCGAAATTTTGAGGGCCGTGTCCACGCCTTGACAAGAGCCAACTATCTTGCTTCACCTCCTTTAGTGGTTGC CTATGCCCTTGCTGGGACGGTTAACATTGACTTTGATAAGGAGCCAATTGGAACAGGAAAGGATGGTAAGAGTGTCTATTTCAGGGATATCTGGCCAACA GCAGAGGAAATTGCAGAGGTCGTTCAATCCAGTGTGTTGCCTGCTATGTTCAAAAGTACATATGAGTCTATCACAAAGGGCAATCCCATGTGGAATCAGC TATCTGTACCAGCTTCAACTTCCTATTCATGGGACCCTAGCTCAACCTATATTCATGAGCCTCCATACTTCAAGAACATGACCATGAATCCTCCTGGAGC TCATGGGGTGAAGGATGCATACTGTTTGCTTAACTTTGGTGATAGTATCACGACAGATCACATTTCTCCAGCAGGAAGCATCCACAAAGACAGTCCTACT GCAAAGTATCTCCTTGAGCATGGGGTGGATCGCAAAGACTTCAACTCTTATGGAAGTCGTCGTGGAAATGATGAAGTGATGGCTAGGGGAACTTTTGCCA ATATTCGCCTTGTTAACAAATTTTTGAATGGGGAAGTGGGACCCAAGACTGTCCATATTCCTACAGGCGAGAAACTCTCTGTGTATGATGCTGCAATGAG GTACAAGAACGCTGGACTTGACACCATTGTTTTGGCTGGAGCTGAGTATGGAAGTGGAAGCTCCAGGGATTGGGCTGCCAAAGGTCCAATGTTATTGGGA GTGAAAGCAGTGATTGCCAAGAGTTTTGAGAGAATTCATCGCAGTAATTTGGTGGGAATGGGAATTATTCCCCTTTGTTTCAAGGCTGGTCAGGATGCGG ACACACTAGGATTGACTGGTCATGAGCGCTATACTATTGACCTTCCAAGCAATATCAGTGAGATAAGACCTGGCCAAGATGTGACTGTCACAACTGACAA TGGGAAATCCTTCACCTGCACAGCTCGCTTTGACACTGCGGTGGAATTGGAATATTTCAACCACGGAGGCATTCTTCCATATGCTATTAGGAGTTTGATG AAGCAGTGA
AA sequence Show only first row Show all	>Potri.002G229200.5 pacid=42776779 polypeptide=Potri.002G229200.5.p locus=Potri.002G229200 ID=Potri.002G229200.5.v4.1 annot-version=v4.1 MHITGLGSASSILRASRARFPPPVSKTSILYSPKFSPSYLTTNNQLRSLSFSSAVRSLRCSYPRWSHGVDWRSPATLRHQIRAVAPVVERFQRKIATMAH EHPFKGIFTSLPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVTKGDVEKIIDWENTAPKLVEIPFKPARVLLQVCLKLEKDFTGVP VVVDLASMRDAMAQLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFHRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNT DGVLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLNGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMSKLSLAD RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQPERVYSAYLQLDLADVEPCISGPKRPHDRVPLKEMKADWHAC LNNKVGFKGFAVPKEAQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLKVKPWIKTSLAPGSGVVTKYLLQSGLQKYLN EQGFNIVGYGCTTCIGNSGDLDESVGAVITENDILAAAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVNIDFDKEPIGTGKDGKSVYFRDIWPT AEEIAEVVQSSVLPAMFKSTYESITKGNPMWNQLSVPASTSYSWDPSSTYIHEPPYFKNMTMNPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPT AKYLLEHGVDRKDFNSYGSRRGNDEVMARGTFANIRLVNKFLNGEVGPKTVHIPTGEKLSVYDAAMRYKNAGLDTIVLAGAEYGSGSSRDWAAKGPMLLG VKAVIAKSFERIHRSNLVGMGIIPLCFKAGQDADTLGLTGHERYTIDLPSNISEIRPGQDVTVTTDNGKSFTCTARFDTAVELEYFNHGGILPYAIRSLM KQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05710		ACO3	aconitase 3 (.1)		Potri.002G229200 [exp]	0	1
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.009G025700 [exp]	1.41	0.7948	ACA3.2
AT5G17380			Thiamine pyrophosphate depende...		Potri.004G094600 [exp]	3.87	0.7863
AT5G15870			glycosyl hydrolase family 81 p...		Potri.004G105300 [exp]	4.24	0.8143
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.001G230500 [exp]	4.89	0.7816	ATCS.2
AT3G54130			Josephin family protein (.1)		Potri.006G095700 [exp]	6.32	0.7792
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Potri.019G018500 [exp]	7.74	0.7548
AT5G53620			unknown protein		Potri.012G023200 [exp]	10.48	0.7721
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	12.64	0.7871
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.004G146100 [exp]	15.87	0.7481
AT5G35560			DENN (AEX-3) domain-containing...		Potri.006G143000 [exp]	17.66	0.7905

Compare expression of checked genes

Potri.002G229200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.