Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21680 42 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153200 [exp] 149 / 1e-46 AT3G21680 45 / 8e-07 unknown protein Potri.009G138700 [exp] 40 / 0.0002 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039676 [exp] 57 / 8e-11 AT3G10120 56 / 2e-10 unknown protein Lus10027167 [exp] 54 / 2e-09 AT3G10120 52 / 4e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G229300.2 pacid=42780167 polypeptide=Potri.002G229300.2.p locus=Potri.002G229300 ID=Potri.002G229300.2.v4.1 annot-version=v4.1 ATGTGCTTCGCCTCCTCAAGCCTCCCTTTCTCTCTATTTATGCTTTCACTACTCTTAATCTTTTTCTCCCTGGCCTCATCTTTTCTCTTACACTTCCTGG TTTCATTTATGGGGAATTGCCTGACAAGTAGCAAGATTGTGTCACAAAATGAAGAGACTACAACATCCTTGGTGTCGTCCAAGATAGAGCGCCCTAAACA TGTTGAAGGTGGCAAGGCCAGGACGGTGAGGTTAGGATTAGATGAAGAGGTTAATGTTGGTAAAGATGGCGAGATGGGTGAGACAACGACATCTAAAGGT GGTGGTGCTGTGAGGATTAGGGTTTTGGTTACAAGAGAAGAGTTAAAGCAAATCTTGGATTTTAGGAAGAACATAAACTACTCTTCTGTGGAGCAAATGA TAGGCGCATTGAGGTTGAGAGAGAGGAGGACGGATCAAGCTGGAGCAAGTAGTGATGGCGGTGTGATCATGAGCAGCAGCAGTTGGAAGCCGGTTCTGGG TAGCATTCCAGAGGAGCGTTAA
AA sequence Show only first row Show all	>Potri.002G229300.2 pacid=42780167 polypeptide=Potri.002G229300.2.p locus=Potri.002G229300 ID=Potri.002G229300.2.v4.1 annot-version=v4.1 MCFASSSLPFSLFMLSLLLIFFSLASSFLLHFLVSFMGNCLTSSKIVSQNEETTTSLVSSKIERPKHVEGGKARTVRLGLDEEVNVGKDGEMGETTTSKG GGAVRIRVLVTREELKQILDFRKNINYSSVEQMIGALRLRERRTDQAGASSDGGVIMSSSSWKPVLGSIPEER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21680			unknown protein		Potri.002G229300 [exp]	0	1
AT1G15385			unknown protein		Potri.003G062300 [exp]	2.23	0.9647
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.010G176600 [exp]	4.47	0.9593
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.006G105900 [exp]	7.93	0.9276
AT1G74500	bHLH	TMO7, PRE3, ATB...	TARGET OF MONOPTEROS 7, activa...		Potri.015G063300 [exp]	8.00	0.9413
AT1G63410			Protein of unknown function (D...		Potri.001G106400 [exp]	8.36	0.9389
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G312600 [exp]	10.67	0.9432
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.009G022800 [exp]	11.53	0.9416
AT4G13580			Disease resistance-responsive ...		Potri.001G054100 [exp]	11.61	0.9412
AT4G34419			unknown protein		Potri.009G102800 [exp]	11.83	0.9443
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Potri.019G066000 [exp]	12.80	0.9453

Compare expression of checked genes

Potri.002G229300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.