Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GLUR3.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05200 1197 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G32390 1109 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT1G42540 974 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT3G51480 940 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT4G35290 922 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 899 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT2G32400 759 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G29120 471 / 4e-151 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 467 / 1e-149 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29110 463 / 6e-148 ATGLR2.8 glutamate receptor 2.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152200 [exp] 1578 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G253800 [exp] 1020 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.002G007400 [exp] 999 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102700 [exp] 988 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.009G168300 [exp] 970 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.005G102600 [exp] 930 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.002G229900 [exp] 879 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G012100 [exp] 539 / 1e-176 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 536 / 1e-175 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039671 [exp] 1314 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10027171 [exp] 1309 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 1025 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 936 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10016031 [exp] 886 / 0 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10026553 [exp] 861 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026552 [exp] 847 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 835 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10031560 [exp] 831 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10015118 [exp] 818 / 0 AT2G32400 987 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.002G230000.3 pacid=42779380 polypeptide=Potri.002G230000.3.p locus=Potri.002G230000 ID=Potri.002G230000.3.v4.1 annot-version=v4.1 ATGGCCATGTCTTTGTTGAATATTTCAGGTGGTAGGGCTAGTATGAAAAGAATGTTGTTGTTGATGTTGATTGCTGGTATTTGTGTGCCCATTGAAGTTG TTTTTGGTCAGGCAGCTGCAAAGGGAAATGGAACTGCTGTTTCTTCTTCCTCTTCTTCAAGGCCGAGTGTTGCAAATATAGGAACTTTATATACTTATGA TTCAGTGATAGGGAAAGCAGCTGGGCCAGCTATTGCAGCTGCTGTTGATGATGTCAATTCTGATCCAACCATTCTTCCTGGGACTAGATTGAACCTTATT TCTCACAACACTAATTGCAGTGGATTTCTTGCAACTGTTGAAGTTTTGCAGCTGATGGTAAATGACGTTGTTGCTGTAATTGGCCCCCAATCTTCTGGAG TAGCCCATATCATATCTCATGTTGTCAACGAGCTTCATGTTACACTTTTGTCATTTGCAGCAACAGATCCCACCCTTTCTGCATTACAGTACCCATATTT CCTCCGCACCACACAGAATGACTATTTCCAGATGTATGCAATAGCTGATATCGTTACGTATTTTGGGTGGCGAGAGGTGATTGCCATTTTTGTGGATGAT GATTATGGAAGAAGTGGGATATCTATACTGGGTGATGCCCTGGCAATGAAGCGTGCCAAGATCTCTTACAAGGCTGCCCTCGCCCCAAGAGCTTCTAGAA GTCAAATCTCCGACTTGTTACTTAAAGTTAACCAGATGGAATCTCGGGTTTATGTTGTACATGTAAATCCTGATTCTGGTTTGTCACTTTTTTCTACTGC TAAAAGCCTTCATATGATGACCAAAGGCTATGTTTGGATTGCTACAGATTGGCTACCTTCGGTTTTAGATGCATTAGAGCCAGATGACACTGACACAATG AATCTTTTGCAAGGGGTTATTGCTCTTCGCCATCACACTCAAGATACTGATCTCAAGAAAAAATTTATGTCCAAGTGGAGCAGCCTAAACCACAAGAATA GCATTGGTGCTTCTGGTTTCAATTCTTATGCACTCTATGCCTATGATACAGTATGGTTAGCTGCCCGAGCTCTTGATGTTTTTCTCAATGAAGGTAGAAA TCTATCATACTCAAGTGATCCAAAGTTGAACGACACAAATGGAAGCGCACTGAACTTATCATCAATGCGTATTTTTGATGGAGGCCAAGAGTTTCTACAG ACACTTCTTAGAATGAACTTCACTGGTCTAAGCGGTCAAATTCAATTTGACATGGATAAGAACTTAGTTCATCCAGCCTATGATGTTCTTAACATTGGTG GGACAGGGTCCAGAAGGATTGGTTATTGGTCAGATTACTCTGGTCTCTCAACTGTTACTCCAGAGGTCTTATATACAAAGCCTAAAAATACTTCTGCCAG TAGTCAACATCTTTACAGTGCAATATGGCCTGGTGAAACTTCGCTTGTACCTCGAGGATGGGTATTCCCTGAAAATGGGAAGCCACTGCGCATTGCAGTG CCCAATCGTATAAGTTATGTACAATTTGTCTCTAAAGACAGGAATCCCCCAGGGGTTAGGGGATACTGCATTGACGTCTTCGAAGCTGCAATAAACTTGC TGCCATATCCTGTCCCGCACATGTATGTGTTACACGGAAATGGCAAGAGAAATCCAGTCTACAATGAGATTGTCCAAGCGGTTGCGGAAGATCGTTATGA TGCAGCTGTTGGAGATGTTACAATAGTCACAAATAGGACAAAGATTGTCGATTTTACACAGCCTTTTATGGAATCAGGGCTGGTTGTAGTAGCTCCGGTC AAGGAGGTGCAGTCTAGCCCCTGGGCTTTCCTTAAGCCATTTACTTTTCAAATGTGGCTTGTTACAGGTGCCTTCTTTCTTCTCGTGGGAGCTGTAGTCT GGATTCTTGAACACCGAATCAATCATGAATTCAGGGGTTCACCAAGGCAACAACTTATGACAATATTCTGGTTTAGTTTCTCAACAATGTTTTTTTCACA CAGAGAGAACACTCTGAGCACCTTGGGACGATTTGTGCTGATCATTTGGCTATTTGTAGTGTTGATTATCAATTCAAGCTACACAGCAAGTTTGACATCC ATCCTCACAGTGCAGCAATTAACATCACGGATTGAAGGGATTGACAGCTTGGCCGCGGGTAATGAACCAATTGGAGTTCAAGATGGGTCATTTGCAAGGA ACTACCTGATCGACGAGCTCAACATCGCAGAATCTAGACTTGTAATATTGAAAAGCCAGGAGGAATACAGTACTTTCCTTCAACTTGGACCAAATCGTGG TGGTGTGGCTGCCATTGTTGACGAGCTTCCTTACATTGAGCTCTTCTTGTCTGCCTCCAATTGTGCATTTAAAATTGTGGGGCAAGAATTCACAAAAAGT GGATGGGGATTTGCGTTTCAAAGGGACTCTCCTCTAGCAGTTGACTTGTCAACTGCCATTCTTCAACTTTCAGAAAATGGTGATCTCCAAAAAATCCACA ACAAATGGCTGACACATGCAGATTGCTCGGCGCAAGGCAATGAAATTGATGAAAATCATCTCTCCCTGAAGAGTTTCTGGGGTCTGTTTCTTATCTGCGG CATTGCGTGCTCCATTTCCCTTGTCGTGTTCTTCTGTAATATCATTTGTCAGTACCGTAGATTTACTCCAGAAGATGGTGAGGAGGCAGAGGTGGATGAG ATTCAGCCACCAAGGCCTCAACGCTCCGTTTGCTCAACTAGCCTCAAGAAATTGATCGGTTTTATAGACAGGAAAGAGGAAGCGATTAATGAGATGATTA AACCAAAGAGTACTGACATCAAACGACAAGGTAGCCCGAGCTCCGATGGGCACACCATTTCATCAGCTTAA
AA sequence Show only first row Show all	>Potri.002G230000.3 pacid=42779380 polypeptide=Potri.002G230000.3.p locus=Potri.002G230000 ID=Potri.002G230000.3.v4.1 annot-version=v4.1 MAMSLLNISGGRASMKRMLLLMLIAGICVPIEVVFGQAAAKGNGTAVSSSSSSRPSVANIGTLYTYDSVIGKAAGPAIAAAVDDVNSDPTILPGTRLNLI SHNTNCSGFLATVEVLQLMVNDVVAVIGPQSSGVAHIISHVVNELHVTLLSFAATDPTLSALQYPYFLRTTQNDYFQMYAIADIVTYFGWREVIAIFVDD DYGRSGISILGDALAMKRAKISYKAALAPRASRSQISDLLLKVNQMESRVYVVHVNPDSGLSLFSTAKSLHMMTKGYVWIATDWLPSVLDALEPDDTDTM NLLQGVIALRHHTQDTDLKKKFMSKWSSLNHKNSIGASGFNSYALYAYDTVWLAARALDVFLNEGRNLSYSSDPKLNDTNGSALNLSSMRIFDGGQEFLQ TLLRMNFTGLSGQIQFDMDKNLVHPAYDVLNIGGTGSRRIGYWSDYSGLSTVTPEVLYTKPKNTSASSQHLYSAIWPGETSLVPRGWVFPENGKPLRIAV PNRISYVQFVSKDRNPPGVRGYCIDVFEAAINLLPYPVPHMYVLHGNGKRNPVYNEIVQAVAEDRYDAAVGDVTIVTNRTKIVDFTQPFMESGLVVVAPV KEVQSSPWAFLKPFTFQMWLVTGAFFLLVGAVVWILEHRINHEFRGSPRQQLMTIFWFSFSTMFFSHRENTLSTLGRFVLIIWLFVVLIINSSYTASLTS ILTVQQLTSRIEGIDSLAAGNEPIGVQDGSFARNYLIDELNIAESRLVILKSQEEYSTFLQLGPNRGGVAAIVDELPYIELFLSASNCAFKIVGQEFTKS GWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHNKWLTHADCSAQGNEIDENHLSLKSFWGLFLICGIACSISLVVFFCNIICQYRRFTPEDGEEAEVDE IQPPRPQRSVCSTSLKKLIGFIDRKEEAINEMIKPKSTDIKRQGSPSSDGHTISSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.002G230000 [exp]	0	1	Pt-GLUR3.3
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.006G129700 [exp]	1.73	0.9711
AT4G24010		CSLG2, ATCSLG1	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142201 [exp]	2.00	0.9687
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154100 [exp]	3.00	0.9630
AT1G01180			S-adenosyl-L-methionine-depend...		Potri.014G103800 [exp]	4.00	0.9540
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G061600 [exp]	4.00	0.9345
AT1G69360			Plant protein of unknown funct...		Potri.018G020800 [exp]	5.00	0.9236
AT2G25870			haloacid dehalogenase-like hyd...		Potri.018G057500 [exp]	6.32	0.9144
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024101 [exp]	8.94	0.9464
AT2G46420			Plant protein 1589 of unknown ...		Potri.002G169900 [exp]	9.94	0.9440
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	10.09	0.9457

Compare expression of checked genes

Potri.002G230000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.