Plant FIBer expression Database

Potri.002G230300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21710 99 / 1e-25 unknown protein
AT5G54790 57 / 1e-10 unknown protein
AT3G20557 45 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G151900
[exp]
244 / 3e-83 AT3G21710 110 / 2e-30 unknown protein
Potri.001G419400
[exp]
88 / 9e-22 AT3G21710 70 / 1e-14 unknown protein
Potri.011G135700
[exp]
87 / 2e-21 AT3G21710 76 / 4e-17 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027176
[exp]
89 / 5e-22 AT3G21710 71 / 2e-15 unknown protein
Lus10039666
[exp]
77 / 8e-18 AT3G21710 77 / 9e-18 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G230300.1 pacid=42777282 polypeptide=Potri.002G230300.1.p locus=Potri.002G230300 ID=Potri.002G230300.1.v4.1 annot-version=v4.1
ATGGAAAACTCTAATAATTATACGTCCATTAATAAAGCTGTTGTTGGTTCAAAAGAAACAACAGTCTCTGATCCTGCTGAGGAGAGTGGTTGGACGTCTT
ATTTTGAAGATTTGTCTAATCATAAAGAAGAAGGTCAGAGTTTATGCTCTAGTTTTGATAGCTCCTCAATGGTTTCTGATGCTGCTTCTTTTCCTCCATG
GAAATCATCTCAAACAAATCATGTTGTTGCCTGCTCTTCCTTTGGGGCCTTGCCAGAAAAGTTAACTTCCAAGAAAACAAGAGCCGAAGAGATTTCTCTT
GATGATTCCTTGGAGGATACTGCTAGTTCTCCTGTGAATAGTCCCAAGGTTAGTGATTTGAGACAGATAGTTATGAATCCCAGGAAGACAAATGATCGAT
ATTTTAACAGTTCTCTTGGTAATATAGAAAGCATTGGTTTAGAGCAACATGCAGAAGGGCTCGAGACAAGTGAAAGATGTGAAATGAATTTCAGTACTGT
GAAAAATGACTGCATAGACTTAAAGAAGAGAGGCTTGTGCTTGGTTCCTTCCTCCATGTTAGTTAACTATCTTGGTTAA
AA sequence
>Potri.002G230300.1 pacid=42777282 polypeptide=Potri.002G230300.1.p locus=Potri.002G230300 ID=Potri.002G230300.1.v4.1 annot-version=v4.1
MENSNNYTSINKAVVGSKETTVSDPAEESGWTSYFEDLSNHKEEGQSLCSSFDSSSMVSDAASFPPWKSSQTNHVVACSSFGALPEKLTSKKTRAEEISL
DDSLEDTASSPVNSPKVSDLRQIVMNPRKTNDRYFNSSLGNIESIGLEQHAEGLETSERCEMNFSTVKNDCIDLKKRGLCLVPSSMLVNYLG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G21710 unknown protein Potri.002G230300
[exp]
0 1
AT3G18650 MADS AGL103 AGAMOUS-like 103 (.1) Potri.008G020300
[exp]
6.48 0.7484
AT2G33860 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRI... Potri.011G059101
[exp]
12.80 0.8124
AT3G52570 alpha/beta-Hydrolases superfam... Potri.016G076601
[exp]
17.20 0.6921
AT1G52630 O-fucosyltransferase family pr... Potri.001G171500
[exp]
20.19 0.7843
AT2G16390 DMS1, CHR35, DR... DEFECTIVE IN RNA-DIRECTED DNA ... Potri.004G159000
[exp]
22.62 0.7787
AT5G41685 Mitochondrial outer membrane t... Potri.018G145502
[exp]
24.00 0.7287
AT4G30850 HHP2 heptahelical transmembrane pr... Potri.018G102400
[exp]
24.97 0.7402
AT5G65950 unknown protein Potri.001G457201
[exp]
27.56 0.7082
Potri.017G045900
[exp]
28.00 0.7059
AT1G79860 ATROPGEF12, ROP... MATERNAL EFFECT EMBRYO ARREST ... Potri.001G183800
[exp]
30.80 0.7505

Potri.002G230300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.