Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59310 436 / 9e-154 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59340 423 / 1e-148 Eukaryotic protein of unknown function (DUF914) (.1) AT3G59320 394 / 6e-137 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59330 247 / 8e-81 Eukaryotic protein of unknown function (DUF914) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151800 [exp] 647 / 0 AT3G59310 417 / 3e-146 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.003G030800 [exp] 283 / 2e-93 AT3G59310 265 / 7e-87 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026744 [exp] 487 / 1e-173 AT3G59310 451 / 4e-160 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10025530 [exp] 475 / 3e-168 AT3G59310 432 / 7e-152 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10004060 [exp] 298 / 2e-99 AT3G59310 305 / 5e-103 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10003247 [exp] 241 / 4e-77 AT3G59310 256 / 1e-83 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10002279 [exp] 101 / 2e-24 AT3G59330 111 / 2e-28 Eukaryotic protein of unknown function (DUF914) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF06027 [poplar] [flax] SLC35F Solute carrier family 35
Representative CDS sequence Show only first row Show all	>Potri.002G230600.1 pacid=42776989 polypeptide=Potri.002G230600.1.p locus=Potri.002G230600 ID=Potri.002G230600.1.v4.1 annot-version=v4.1 ATGTTGAGCTTTAAGGAGTTTTGGACGAAGAAAACATTGGTGGCTCTTGGGTTGGGGCAGTTTCTCTCTCTCCTCATTACTTCTACTGGATTTTCATCCT CTGAACTTGCTAGAAGAGGAATTAATGCACCAACTTCTCAGTCCTTTCTAAACTACGTCTTCTTGGCCATTGTTTATGGAAGTATTATGTTTTATCGGAA GCAAGCACTTAAGGCAAAATGGTACTACTATGCTATTCTTTCATTGGTCGATGTAGAGGCCAATTTTCTTGTGGTGAAGGCCTATCAATACACATCGATC ACAAGTGTCATGCTGCTGGACTGTTGGTCAATCCCTTCTGTTATGGTTCTTACATGGTTTTTCTTGAGCACAAAGTACAGATTCAAGAAAATAGCTGGAG TAGCTGTTTGTGTTGCAGGCCTTGTTATGGTTGTTTTTTCAGATGTTCACACTGGTGATCGATCAGGTGGGAGCAACCCTCGTAAAGGAGATGCTCTTGT TATTGCTGGAGCAACGCTGTATGCTATCAGTAATGTCAGTGAGGAGTTTCTTGTAAAAAATGCTGATAGAGTTGAGCTCATGTCACTTCTGGGCTTTTTT GGTGCCATAATCAGTGCCATTCAAATAAGTATTCTGGAGCGCAACGAAGTTAAATCCATTCACTGGTCAGCTGGGGCAGCTCTTCCGTTTTTTGGATTTT CAGTGGCAATGTTTCTGTTCTACTCTTTAGTCCCGATCTTGCTTAAGATTAGTGGTTCCACGATGCTCAACTTGTCTTTGCTGACATCAGACATGTGGGC TGTTGTGATTCGCATCTTTGCTTATCATGAGAAGGTTGATTGGATGTACTTTGTGGCCTTTGCTGCTGTTGCTGTTGGGTTGATCGTTTATTCTGGGGGT GACAAGGAAGAGGATCAACACCATGCTGATGCTGGTGGTGAAGATGCAGAAAGAAGTAAACATTTCGACGAGGAGGCATGTTCTGGAAACCGCGGTCAAA AAACTATCCCTGGGAGCTCAAAAACCTGGGATAGTAGTAAGCATGATCTTGCTAGCACCAGCATTGCAGATGAGCAAGACATTGAGAGCAAGAATGTGGG AAAAGATGTGTGGGGGAAGAAATCATAA
AA sequence Show only first row Show all	>Potri.002G230600.1 pacid=42776989 polypeptide=Potri.002G230600.1.p locus=Potri.002G230600 ID=Potri.002G230600.1.v4.1 annot-version=v4.1 MLSFKEFWTKKTLVALGLGQFLSLLITSTGFSSSELARRGINAPTSQSFLNYVFLAIVYGSIMFYRKQALKAKWYYYAILSLVDVEANFLVVKAYQYTSI TSVMLLDCWSIPSVMVLTWFFLSTKYRFKKIAGVAVCVAGLVMVVFSDVHTGDRSGGSNPRKGDALVIAGATLYAISNVSEEFLVKNADRVELMSLLGFF GAIISAIQISILERNEVKSIHWSAGAALPFFGFSVAMFLFYSLVPILLKISGSTMLNLSLLTSDMWAVVIRIFAYHEKVDWMYFVAFAAVAVGLIVYSGG DKEEDQHHADAGGEDAERSKHFDEEACSGNRGQKTIPGSSKTWDSSKHDLASTSIADEQDIESKNVGKDVWGKKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59310			Eukaryotic protein of unknown ...		Potri.002G230600 [exp]	0	1
AT4G26450		WIP1	unknown protein		Potri.001G472600 [exp]	3.87	0.7816
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G101800 [exp]	7.74	0.7497
AT2G46550			unknown protein		Potri.002G173200 [exp]	8.30	0.7646
AT2G23360			Plant protein of unknown funct...		Potri.007G046100 [exp]	13.19	0.7660
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Potri.002G016700 [exp]	25.78	0.7234
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.015G106200 [exp]	26.70	0.6932
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.006G039500 [exp]	29.12	0.6991
					Potri.006G267450 [exp]	31.49	0.7228
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.011G132700 [exp]	33.04	0.7019
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.008G179500 [exp]	33.85	0.7268

Compare expression of checked genes

Potri.002G230600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.