Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59300 542 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G24060 177 / 8e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT3G49140 129 / 3e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151700 [exp] 780 / 0 AT3G59300 523 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G148600 [exp] 191 / 3e-55 AT3G49140 256 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G072400 [exp] 178 / 3e-50 AT5G24060 377 / 1e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027532 [exp] 176 / 2e-49 AT5G24060 402 / 4e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10039291 [exp] 171 / 2e-47 AT5G24060 400 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10014952 [exp] 138 / 5e-36 AT5G24060 324 / 2e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10038836 [exp] 133 / 2e-34 AT3G49140 275 / 5e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G230700.6 pacid=42776906 polypeptide=Potri.002G230700.6.p locus=Potri.002G230700 ID=Potri.002G230700.6.v4.1 annot-version=v4.1 ATGGTGATCGCTGCAGCAGCGGCAGCAGCTATTGCTTCTTCGCTTTCACTCGGTACTTCCCATTGTCAACTATGCCAGGCAGATGCCTTTTGCTGCTCAA CATCACACGGGGGCACAAATAGCTGGAACAAATCTCCTATTGACAGTTGCAGACCTTGTGACCTTTCCAGCATAAGGTACAGAAATCCATTTTTTGGATC AACACAGTTCCAATGGTCATCTGTGGGCCGTAATCTTTGCCTTCAGAAAGTTTCAGTTGCTGCAGATTACTCTGATTCGGTTCCTGATTCATCTAATTAC ACAAGTCATCGAGGTTATCATCCACTAGAAGAGGTGAAACTTAGCAAAAGGACTCGTGAAACTCAGCTCACCTCTGCTGAAATAGCAAGGACAACTGTTG AGGCTAATACTAGTGCTTTGCTGGTTTTTCCTGGATCCGTACATTGTGAACCACATGGACAAATTTCCTGGGCCGAATTTCAGTATATCATTGATGACTA TGGAGACATATTCTTTGAGATTTTTGACAATAGCAATATCTTACAAGATCGAGGAGCTAGCAACCCTGTGAATGTTTTGATTGGGATGGATATTCCAATG TACGAGAATAAAAAGGTAGTCAATGAATACAATATTTTCAATGTTGGCAGTGAAGATGATATACCATTTGATGAGGATTACTTTGAGGTAATGGATTCGG AAGACTCTGAAGTTCCAGTTGATTGGGGAATGCCATATACTTCCAGCTTGGTTCATCCTATTTATTTTGCCAAGTGCATGACAAAGGCAATCAATATGGA ATACTATAGAAAAATGGACCATCCATCAAATGGTGTTTCTATTGTGGGTTGTCTGAGACCAGCTTTTTCTGATGAAGAATTATACTTAAGAACGTCATTT CACTGTGGGGATAGTGATGGCTATAATTCAGACCGGAAAGACACAGAAATTTTGAGCTTTAACTCCAAAAGTGATGTAAGCAGCTCTGGTTCAACTCTCC ATTGCTTGGAGATCATGAGAATAGAGCTATTTTCATTGTATGGATCTCAGTCTGCGGTTAGTTTACAAGATTTTCAAGAAGCAGAGCCTGATGTCCTTGC ACACTCGACTCCAGCAATTTTAGAGCACTTTAGTGAAAAGGGAAGTAGATGCAATATTGCTCTTAAAGCTCTTTGCAAGAAGAAGGGTCTTCATGTTGAG AGAGCTAATTTGATTGGGGTTGATAGCCTTGGCATGGATGTTAGAATTTTCTCTGGGGTGGAAGCACGAACTCATCGGTTTCCCTTCAAAGTCCGGGCTA CCTGTAAAACTGCTGCACAAAAGCAGATTCATCAGCTGTTGTTCCCTAGGGCTCGCCGAAAAAAGTTTAAAACTCACGAAGATGAGCTTGGGGACTCCTC ATATTTCTAA
AA sequence Show only first row Show all	>Potri.002G230700.6 pacid=42776906 polypeptide=Potri.002G230700.6.p locus=Potri.002G230700 ID=Potri.002G230700.6.v4.1 annot-version=v4.1 MVIAAAAAAAIASSLSLGTSHCQLCQADAFCCSTSHGGTNSWNKSPIDSCRPCDLSSIRYRNPFFGSTQFQWSSVGRNLCLQKVSVAADYSDSVPDSSNY TSHRGYHPLEEVKLSKRTRETQLTSAEIARTTVEANTSALLVFPGSVHCEPHGQISWAEFQYIIDDYGDIFFEIFDNSNILQDRGASNPVNVLIGMDIPM YENKKVVNEYNIFNVGSEDDIPFDEDYFEVMDSEDSEVPVDWGMPYTSSLVHPIYFAKCMTKAINMEYYRKMDHPSNGVSIVGCLRPAFSDEELYLRTSF HCGDSDGYNSDRKDTEILSFNSKSDVSSSGSTLHCLEIMRIELFSLYGSQSAVSLQDFQEAEPDVLAHSTPAILEHFSEKGSRCNIALKALCKKKGLHVE RANLIGVDSLGMDVRIFSGVEARTHRFPFKVRATCKTAAQKQIHQLLFPRARRKKFKTHEDELGDSSYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.002G230700 [exp]	0	1
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031850 [exp]	3.74	0.9512
AT3G49142			Tetratricopeptide repeat (TPR)...		Potri.005G005700 [exp]	5.91	0.9471
					Potri.003G153400 [exp]	7.34	0.9444
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Potri.017G041000 [exp]	10.24	0.9416
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.009G030800 [exp]	17.83	0.8696
AT4G30460			glycine-rich protein (.1)		Potri.006G178200 [exp]	18.76	0.9252
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G179300 [exp]	19.79	0.9260
AT5G38770		ATGDU7	glutamine dumper 7 (.1)		Potri.004G108440 [exp]	20.12	0.9085
ATCG00540		ATCG00540.1, PE...	photosynthetic electron transf...		Potri.013G162200 [exp]	20.24	0.8551
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Potri.008G133900 [exp]	20.66	0.8658

Compare expression of checked genes

Potri.002G230700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.