Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47980 1292 / 0 SCC3, ATSCC3 sister-chromatid cohesion protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151400 [exp] 1420 / 0 AT2G47980 957 / 0.0 sister-chromatid cohesion protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015341 [exp] 1429 / 0 AT2G47980 1347 / 0.0 sister-chromatid cohesion protein 3 (.1) Lus10008306 [exp] 1331 / 0 AT2G47980 1261 / 0.0 sister-chromatid cohesion protein 3 (.1) Lus10023798 [exp] 344 / 2e-101 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10034339 [exp] 189 / 1e-48 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08514 [poplar] [flax] STAG STAG domain
Representative CDS sequence Show only first row Show all	>Potri.002G230800.1 pacid=42776881 polypeptide=Potri.002G230800.1.p locus=Potri.002G230800 ID=Potri.002G230800.1.v4.1 annot-version=v4.1 ATGGAGGACCACCCCGAAACTTCCCGAAACCGCTCTAAGAGGAATCGGTCTAAGAACGCGACCGAGGAGAGAACAAGTGAGGAGGTGGAGGAGCGCGAGG ATGATTTCGAAGAGGTTCGCCCTAAATCCAAGCGTAATCGTGCTGCTAAGGATGACACTCCCGCCGCCGTCCTCCTCAATCCCGACCAAAGCTTGATAGA TGTTATTAAAGGGAATGGGGTACAAATTCCTCAGGCGGTGAAGCTTTGGGTTGAGCGATATGAGAAGGATCCAAAACTTGCAATGGTTGAGCTCTTGACG ATGCTGTTTGAGGCATGTGGAGCCAAGTATAGTATCAAGAAAGAGTTGCTGGATGAGACTGATGTTGATGATGTTGTCGTTGCTCTTGTCAATCTTGCAA GAAATGGTGAAGTTGAAGATTATCAGAGTTCAAAGAGGAAGGACTTCAAACACTTTAAAGATAACCTCATCACATTCTGGGACAATTTGGTTACTGAGTG CCAAAATGGGCCCCTGTTTGATAAGGTTTTGTTTGACAAATGCATGGACTATATAATAGCACTGTCATGCACTCCACCAAGAGTTTACCGTCAAGTTGCA TCCTTGATGGGTCTCCAACTTGTCGCGTCATTCATAACAGTAGCTAAAGCGCTTGGCTTACAACGAGAAACTACTCAGAGACAATTAAATGTGGAAAAGA AGAAACAAATAGAAGGACCTCGTCTAGAGTCCCTAAATAAAAGGTTATCAGCAACTCATGATAAGATACTTGTACTAGAGGACTTGATGCGCAAAATATT TACCGGGTTATTCGTGCATCGGTACCGTGATATTGATCCTAATATTCGAACATCATGCATTGAGTCTCTTGGTGTATGGGTTTTGTCCTATCCATCACTT TTCTTGCAGGATTTATACTTAAAGTATCTTGGATGGACACTAAATGATAAAAATGCAGGTGTCAGAAAAGCATCTGTTCAAGCATTAAAAAAACTTTATG ATGTGGATGATAATGTGCCCACTCTCGGTCTTTTTACTGAAAGATTTTCCAACCGGATGATTGAGCTTGCTGATGACATTGATGTTTCTGTAGCTGTTTG TGCCATAGGACTTGTAAAACAATTACTTAGGCATCAGCTCCTACCTGATGATGACTTGGGTCCGTTATATGATTTACTTATTGATGATCCAGCAGAAATC AGGCGTGCCATAGGAGAATTGGTGTATGATCACCTAATTGCACAAAAATTTAACAACTCTCAATCTAGCTCAAAAGGCAGTGATGATGGCTCTTCTGAGG TTCATCTTAGCAGAATGTTGCAGATTTTGAGGGAGTTTTCAGCTGATCCAATTCTCAGTATCTATGTTATTGATGATGTTTGGGAGTACATGAAAGCAAT GAAGGACTGGAAGTGTATTATTTCCATGCTCCTGGATGCGAATCCATTAATTGAGCTTACCGATGATGATGCTACAAATTTGGTTAGACTTCTTTCTGCA TCTGTCAGAAAGGCTGTGGGAGAGAGGATTGTTCCAGCATCAGATACTCGAAAGCAATATTACAATAAAGCTCAGAAAGAAATATTTGAAAATAATAGAC GGGACATAACTATCGCCATGATGAAGAACTACCCGCTACTTCTGCGCAAATTCATGGCCGACAAATCAAAAGTGCCATCATTGGTTGAGATCATTGTGCA TATGAACCTAGGGCTTTATTCTCTGAAGAGACAGGAGAGTAATTTCAAAAATGTCCTTCAGCTCATGAAACAGTCATTTTTTATACATGGTGACAAGGAA GCACTCAGATCTTGTGTGAAGGCTATCAAGTTCTGTTCCACCGAAAGTCAAGGAGAGCTGAAAGATTATGCTCTAAATAAATTGAAGAATCTTGAAGATG AACTCATTAATAAGCTTAAGTCTGCAGTGAAAGAAGCAGCGGATGGTGATGAATATTCTCTGCTTGTGAATTTGAAAAGGTTATATGAGCTTCAGTTGGC ATGGTCTGTACCTATTGAGAGCTTATATGAAGATATTGTTAAGGTTCTCCACACTTTCAGAAATGTGGATGATGAGGTTGTCAGTTTTCTTCTGCTCAAT ATGTATTTGCATGTAGCCTGGAGTCTGCAGTCTATTGTAAACAGTGAAACTGTCTCTGAAGCTTCGTTAACTTCTCTACTGTTTAAACGCAATGCCTTGT TTGAGGAACTTGAGTACTTTCTTGGAACCCCTTCTGAAGATAGGGAAGGGAATAAATGTGGAAATCAGCTTGCTTGTAGAGTTTGTATTATACTTGCAGA AGCATGGTGTTTGTTCAGAAAGACTAATTTTTCTTCAACAAAGCTGGAACATTTAGGATATTGTCCAGATACATCTGTTCTACAAAGGTTCTGGAAACTT TGTGAACAACAGTTAAATATTTCAGATGAGACAGAAGATGAAGAGACAAACAAGGAGTACATTGAGGAGACAAACAGAGACGCAGTTATGATTGCTTCAG CGAAGTTGGTAGTTAGCAGTGCAGTTCCCAGGGAATATCTTACTCCGGAGATCATTTCTCACTTTGTGATGCATGGAACAAGTGTTGCAGAGATAGTCAA GCATCTAATCACCATCATAAAGAAGAATGATGATTTTCCAGACATTTTCCTAGAAGCATTGAAAAGGGCCTATGATCGGCATCTGGTGGATCTTTCAAAA AGTGATGATGAATCTTTCACCAGCAAATCTCTTATAGAGTGCAAGGATCTTGCTGCTCGACTTTCTGGGACATTCGTGGGTGCTGCTCGGAACAAGCATA GATCTGATATTCTAAAAATCGCCAGGGATGGTATTGAATATGCTTTCTTAGATTCTCCAAAACAGCTCTCTTTTCTGGAAGGTGCTGTGCTTCATTTTGT GTCCAAGCTTCCTGTGGTTGACATCCTGGAAATTCTAAAGGATGTCCAGAGCAGGACAGAGAATATAAATACTGATGAAGATCCTAGTGGCTGGCGCCCT TACCACACATTTGTTGACAGCTTACGAGAGAAGTATGTGAAGAATGAAGGTTTGCCAGATGAGAAAGAGAGGAAACGCGGTGGTCGCCCAAGAAAGCGGC GTAATATTGAGGGAAAGAGATTGTTTGATGAGGACAGTTCAAGCGAAGAAGAGGATTCTATTAGTGGTTCAGATCGAGAAGATGCTCATGATGAAGAAGA GAAGCAGGATGAGGAGGAAGAGGATGAGGCTCCTTTGATACATTCCCTCAGGTCATCATCCAAGTTGAGGTCATTGAAACTTTCAAGAGATGAAAACAAA GGCCATAGAAGGACAGGAGTTTCTGCTTCTAAAACATCAGGGGCATCAAACTAG
AA sequence Show only first row Show all	>Potri.002G230800.1 pacid=42776881 polypeptide=Potri.002G230800.1.p locus=Potri.002G230800 ID=Potri.002G230800.1.v4.1 annot-version=v4.1 MEDHPETSRNRSKRNRSKNATEERTSEEVEEREDDFEEVRPKSKRNRAAKDDTPAAVLLNPDQSLIDVIKGNGVQIPQAVKLWVERYEKDPKLAMVELLT MLFEACGAKYSIKKELLDETDVDDVVVALVNLARNGEVEDYQSSKRKDFKHFKDNLITFWDNLVTECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVA SLMGLQLVASFITVAKALGLQRETTQRQLNVEKKKQIEGPRLESLNKRLSATHDKILVLEDLMRKIFTGLFVHRYRDIDPNIRTSCIESLGVWVLSYPSL FLQDLYLKYLGWTLNDKNAGVRKASVQALKKLYDVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPAEI RRAIGELVYDHLIAQKFNNSQSSSKGSDDGSSEVHLSRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDANPLIELTDDDATNLVRLLSA SVRKAVGERIVPASDTRKQYYNKAQKEIFENNRRDITIAMMKNYPLLLRKFMADKSKVPSLVEIIVHMNLGLYSLKRQESNFKNVLQLMKQSFFIHGDKE ALRSCVKAIKFCSTESQGELKDYALNKLKNLEDELINKLKSAVKEAADGDEYSLLVNLKRLYELQLAWSVPIESLYEDIVKVLHTFRNVDDEVVSFLLLN MYLHVAWSLQSIVNSETVSEASLTSLLFKRNALFEELEYFLGTPSEDREGNKCGNQLACRVCIILAEAWCLFRKTNFSSTKLEHLGYCPDTSVLQRFWKL CEQQLNISDETEDEETNKEYIEETNRDAVMIASAKLVVSSAVPREYLTPEIISHFVMHGTSVAEIVKHLITIIKKNDDFPDIFLEALKRAYDRHLVDLSK SDDESFTSKSLIECKDLAARLSGTFVGAARNKHRSDILKIARDGIEYAFLDSPKQLSFLEGAVLHFVSKLPVVDILEILKDVQSRTENINTDEDPSGWRP YHTFVDSLREKYVKNEGLPDEKERKRGGRPRKRRNIEGKRLFDEDSSSEEEDSISGSDREDAHDEEEKQDEEEEDEAPLIHSLRSSSKLRSLKLSRDENK GHRRTGVSASKTSGASN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.002G230800 [exp]	0	1
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.002G188700 [exp]	3.00	0.8569
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.001G276800 [exp]	3.16	0.8218
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	4.00	0.8542
AT1G68030			RING/FYVE/PHD zinc finger supe...		Potri.016G053300 [exp]	5.91	0.8397
AT4G26455		WIP1	WPP domain interacting protein...		Potri.001G472000 [exp]	9.38	0.7876
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	9.64	0.8512
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	12.96	0.8394
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.002G103300 [exp]	16.30	0.7965
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.016G002100 [exp]	17.88	0.7952
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Potri.014G098400 [exp]	18.65	0.7163

Compare expression of checked genes

Potri.002G230800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.