Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48040 485 / 4e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 278 / 6e-90 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G71850 209 / 7e-63 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 206 / 3e-62 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G24320 198 / 3e-59 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 158 / 4e-44 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 150 / 7e-41 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 144 / 5e-39 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 145 / 2e-38 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 141 / 1e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195900 [exp] 291 / 4e-95 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.008G036600 [exp] 220 / 1e-67 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.004G223200 [exp] 208 / 9e-63 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 214 / 1e-62 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 176 / 1e-50 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 163 / 1e-45 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 150 / 7e-41 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 147 / 4e-39 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 142 / 7e-38 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011327 [exp] 523 / 0 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 517 / 0 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 265 / 2e-84 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 236 / 2e-74 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10038710 [exp] 221 / 7e-68 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 217 / 6e-64 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 216 / 8e-64 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 162 / 1e-45 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 162 / 2e-45 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10037979 [exp] 154 / 7e-44 AT2G39120 308 / 1e-104 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [poplar] [flax] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Potri.002G230900.1 pacid=42779962 polypeptide=Potri.002G230900.1.p locus=Potri.002G230900 ID=Potri.002G230900.1.v4.1 annot-version=v4.1 ATGGTTTTTCTGCTGTTGTTAAAAAAGGGAGCTGGATGCTCCAATTTTCTTGGTGCGTTTCGGACAGGATACAATTACCAGCAAAAATTTAGCTTGGTGA ATGTCAAGTTAAAATGGGTGAAGGATAGAGTATTGGATGCTGTAGTGGCAGATCAGGCAGATCTTAAAGCAGCTTGCATACTTGTTTCGATCATCTCTTC TGCTCGCGGATGCTGCCTTCCTATATACCGGCTTAGACTGCATCGTGGGCAGCTTGGGCTGCCTCATGATCTTAAGCTCTCTACATTTATCAGGAGATAT CCTAATATTTTCTGTGAATCTCATGTTCTTGATAGTGGAGGCACTCGTGTTCCCTGCTTTCAGTTGACTGCTGAAGCCCTAGATCTCCGCCGTGAAGAAC TTGGAATTCTTGAGCAGAATCAAATTGATTTGGTTGAACGGCTATGCAAACTGCTTATGCTTACAAGGGATAGGACACTGCCATTACAAACCATTGACCA GCTGAGATGGGACATGGGATTGCCTTATGACTATTTTGATTCCTTGATTCCACTTCACCCTGATTTGTTTTCTTCAGTTCGCCTTCCTGACGATCGTGTT GGCTTGAAACTCCAAGTTTGGGATGATCGCCTTGCTGTCTCCCAGCTGCAGAAGAATGCTGCTTTTCAACAGAAGGAAGAAGACATGAAAAATGGCTGCT TAGCCTTTCCAGTTGGCTTTACAAGGGGCTTTGGATTGAAGAGGAAATGCATGGAATGGTTGGAAGAGTGGCAGAGACTTCCATATACTTCACCTTACTC TGATGCCTCAGATTTGGATCCACGAACAGATGTGTCTGAGAAGAGAATTGTTGGAGTCTTTCATGAGCTTCTCCACCTTACTGTACATAAGAGAACGGAG CGCAAGAATGTAAGCAATCTTCGCAACCCATTGTCACTGCCCCAGAAGTTCACTAGGGTGTTTGAGCGACATCCTGGCATTTTTTACATCTCAAAGAAGA GTGATACTCAGACTGTGGTTCTTAGAGAAGCATATGATCGGCAACAACTTATACATAAACATCCTCTTGTTGATATCAGGGGAAAATATGCAAGTATGAT GAGAAAGGGATTTTTGGATAGAAGTAGAGGCTTATACAAGAAAACAGCATCTTCTGGTCCAGAGGAATCAATGATTGTTCATGGTGATGAACCCACTGAT AGTTGTGAAGAAGATTTAGGCTGTGATTTGCTTTCCGAATAA
AA sequence Show only first row Show all	>Potri.002G230900.1 pacid=42779962 polypeptide=Potri.002G230900.1.p locus=Potri.002G230900 ID=Potri.002G230900.1.v4.1 annot-version=v4.1 MVFLLLLKKGAGCSNFLGAFRTGYNYQQKFSLVNVKLKWVKDRVLDAVVADQADLKAACILVSIISSARGCCLPIYRLRLHRGQLGLPHDLKLSTFIRRY PNIFCESHVLDSGGTRVPCFQLTAEALDLRREELGILEQNQIDLVERLCKLLMLTRDRTLPLQTIDQLRWDMGLPYDYFDSLIPLHPDLFSSVRLPDDRV GLKLQVWDDRLAVSQLQKNAAFQQKEEDMKNGCLAFPVGFTRGFGLKRKCMEWLEEWQRLPYTSPYSDASDLDPRTDVSEKRIVGVFHELLHLTVHKRTE RKNVSNLRNPLSLPQKFTRVFERHPGIFYISKKSDTQTVVLREAYDRQQLIHKHPLVDIRGKYASMMRKGFLDRSRGLYKKTASSGPEESMIVHGDEPTD SCEEDLGCDLLSE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48040			Ubiquitin carboxyl-terminal hy...		Potri.002G230900 [exp]	0	1
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	40.69	0.8731
AT4G10270			Wound-responsive family protei...		Potri.019G116700 [exp]	40.79	0.8662
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Potri.001G295200 [exp]	44.83	0.8666
AT3G26115			Pyridoxal-5'-phosphate-depende...		Potri.010G051200 [exp]	50.21	0.8589
AT2G35130			Tetratricopeptide repeat (TPR)...		Potri.012G123600 [exp]	55.42	0.8686
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G073700 [exp]	71.58	0.8573
AT5G20300		Toc90	translocon at the outer envelo...		Potri.018G123300 [exp]	107.51	0.8515
AT3G62550			Adenine nucleotide alpha hydro...		Potri.014G122000 [exp]	117.12	0.8489
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Potri.004G163600 [exp]	127.67	0.8434
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.008G106500 [exp]	141.98	0.8285

Compare expression of checked genes

Potri.002G230900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.