Plant FIBer expression Database

Potri.002G231000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43180 589 / 0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
AT1G77060 192 / 1e-56 Phosphoenolpyruvate carboxylase family protein (.1)
AT1G21440 189 / 1e-55 Phosphoenolpyruvate carboxylase family protein (.1)
AT3G21720 59 / 5e-09 ICL isocitrate lyase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G073600
[exp]
75 / 7e-16 AT1G77060 214 / 3e-70 Phosphoenolpyruvate carboxylase family protein (.1)
Potri.017G036900
[exp]
58 / 9e-09 AT3G21720 924 / 0.0 isocitrate lyase (.1)
Potri.007G122900
[exp]
57 / 2e-08 AT3G21720 951 / 0.0 isocitrate lyase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025529
[exp]
724 / 0 AT2G43180 608 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
Lus10026743
[exp]
712 / 0 AT2G43180 600 / 0.0 Phosphoenolpyruvate carboxylase family protein (.1.2.3.4)
Lus10031552
[exp]
57 / 2e-08 AT3G21720 998 / 0.0 isocitrate lyase (.1)
Lus10015122
[exp]
57 / 2e-08 AT3G21720 1003 / 0.0 isocitrate lyase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0151 PK_TIM PF00463 ICL Isocitrate lyase family
Representative CDS sequence
>Potri.002G231000.1 pacid=42779719 polypeptide=Potri.002G231000.1.p locus=Potri.002G231000 ID=Potri.002G231000.1.v4.1 annot-version=v4.1
ATGATGGGTCCAGTAATTAGCAGTAGAGACTGTGGTAGCAGAGCTGCTGCAGTCCCTCTCGTGGTTTCCTCCAAAACCAAAGCTCAAACTCACCCACCAA
CATCACTTGTTCTTCCCTTTTCAAATCCCAAATCCCAACTCTCTCTTTTCAATATTCACCACAAATTCTACCATAATAGAAGAAATGGGGTGGCTCAAAG
CAGCCCCAAAATGGTTACATGCTCCGCCTCCGCTGAGAAAAATAACTCTGCGGCAAAGAAGTTGCGTCTCATCCTTGACTCTCCTGGGGTTCACCAGGGC
CCTGCTTGTTTTGATGCTTTAAGTGCTCTGCTTGTCCAGCGAGCTGGTTTTGATTATTGTTTCACCAGTGGATTTTCGATATCGGCAGCTAAATTGGGGT
TGCCTGATACTGGATTTATTTCCTATGGAGAAATGGTGGATCAAGGCCAACAAATTACTCAAGCTGTATCCATTCCTGTCATTGGAGATGCCGATAATGG
ATATGGGAATCCCATGAATGTTAAAAGAACTGTCAAGGGTTATATTAGAGCTGGCTTCGCCGGGATCATCCTTGAAGATCAGGTGTCTCCAAAAGCTTGT
GGCCATACTCGTGGCAGGAAAGTGGTGTCTCGGGAGGAAGCCATAATGCGGATAAAAGCAGCTGTCGATGCACGGGAAGAGACTGGATCAGATATTGTTA
TTGTTTCACGAACTGATTCTCGTCAAGCAGTGTCTTTGGATGAATCTCTTTGGAGGTCAAGAGCTTTTGCTGATGCTGGAGCAGATGTCCTTTTCATTGA
TGCACTAGCTTCAAGAGAAGAGATGAAGTCTTTCTGTGAAATCTCTCCCTTAGTTCCAAAAATGGCCAACATGCTTGAAGGAGGAGGAAAAACACCAATA
GTCACTCCTTTTGAACTTGAGGAGGTTGGATATAAACTTGTGGCCTACCCTCTTTCCTTGATCGGGGTATCTATAAGAGCTATGCAGGATTCACTAGCTG
CCATCAAAGGAGGTCGTATCCCTCCTCCTGGCAGCATGCCATCTTTTGAAGAAATAAAGGATATCTTAGGTTTCAACACTTACTATGAAGAAGAGAAGCA
GTATGCAATCAGCAGCAGTCAAATGGCTAGGCAGAGAGCAAGCAGTAATGTTTATGGCATACAACGGAGGACTCCAGATTATACAGAGCAAAGAAGTCAG
AGTCCTCAAGATCCTGTTGTTGAAGTGATCACTCCAGAAGTATACGGTGGCTATGGTGCAGATAATTCAAGAGGTCCTTTTTCTGGGATCTGGTCTCGAA
CATTGAGAGTCAAAATAACTGGAAGAGATGGATTTGAAAAACTTGATGTTAGGATTCCAGCTGGGTTCTTGGAGGGGATCACAAATATAGTTCCAGCTTT
GGGAGGTGTGAACATTAAAGGACTCTTGGATGATGCAGCTGAGGAAGTAGGAGGCAAGCTCTTGTTAGATTTTAATGATACCGTTGGTGACAGGATTCAA
GTATTTCTAGAATAA
AA sequence
>Potri.002G231000.1 pacid=42779719 polypeptide=Potri.002G231000.1.p locus=Potri.002G231000 ID=Potri.002G231000.1.v4.1 annot-version=v4.1
MMGPVISSRDCGSRAAAVPLVVSSKTKAQTHPPTSLVLPFSNPKSQLSLFNIHHKFYHNRRNGVAQSSPKMVTCSASAEKNNSAAKKLRLILDSPGVHQG
PACFDALSALLVQRAGFDYCFTSGFSISAAKLGLPDTGFISYGEMVDQGQQITQAVSIPVIGDADNGYGNPMNVKRTVKGYIRAGFAGIILEDQVSPKAC
GHTRGRKVVSREEAIMRIKAAVDAREETGSDIVIVSRTDSRQAVSLDESLWRSRAFADAGADVLFIDALASREEMKSFCEISPLVPKMANMLEGGGKTPI
VTPFELEEVGYKLVAYPLSLIGVSIRAMQDSLAAIKGGRIPPPGSMPSFEEIKDILGFNTYYEEEKQYAISSSQMARQRASSNVYGIQRRTPDYTEQRSQ
SPQDPVVEVITPEVYGGYGADNSRGPFSGIWSRTLRVKITGRDGFEKLDVRIPAGFLEGITNIVPALGGVNIKGLLDDAAEEVGGKLLLDFNDTVGDRIQ
VFLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43180 Phosphoenolpyruvate carboxylas... Potri.002G231000
[exp]
0 1
AT4G23950 Galactose-binding protein (.1.... Potri.001G089700
[exp]
1.00 0.9283
AT5G53500 Transducin/WD40 repeat-like su... Potri.002G174100
[exp]
2.44 0.9159
AT4G03260 Outer arm dynein light chain 1... Potri.019G119300
[exp]
5.47 0.9058
AT3G54000 unknown protein Potri.006G093000
[exp]
9.38 0.8922
AT1G80770 PDE318 pigment defective 318, P-loop ... Potri.002G134900
[exp]
9.94 0.9056
AT2G36950 Heavy metal transport/detoxifi... Potri.016G093100
[exp]
11.31 0.9150
AT5G45800 MEE62 maternal effect embryo arrest ... Potri.004G058500
[exp]
13.41 0.9054
AT3G59140 ATMRP14, ABCC10 ATP-binding cassette C10, mult... Potri.012G033500
[exp]
14.49 0.9070
AT1G72660 P-loop containing nucleoside t... Potri.001G170300
[exp]
18.97 0.8546 Pt-DRG1.1
AT5G03650 SBE2.2 starch branching enzyme 2.2 (.... Potri.006G115100
[exp]
20.07 0.8870

Potri.002G231000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.