Plant FIBer expression Database

Potri.002G231100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43160 316 / 3e-96 ENTH/VHS family protein (.1.2.3.4)
AT3G59290 302 / 8e-88 ENTH/VHS family protein (.1)
AT5G11710 228 / 9e-65 ENTH/VHS family protein (.1)
AT3G23350 78 / 2e-15 ENTH/VHS family protein (.1)
AT3G46540 77 / 4e-15 ENTH/VHS family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G151300
[exp]
757 / 0 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Potri.006G234100
[exp]
221 / 3e-62 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1)
Potri.001G239200
[exp]
77 / 6e-15 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1)
Potri.009G030500
[exp]
71 / 8e-13 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1)
Potri.008G055600
[exp]
54 / 3e-07 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025527
[exp]
376 / 4e-116 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Lus10019571
[exp]
369 / 4e-113 AT2G43160 588 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Lus10026741
[exp]
365 / 5e-112 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Lus10007460
[exp]
230 / 4e-65 AT5G11710 538 / 0.0 ENTH/VHS family protein (.1)
Lus10005498
[exp]
229 / 6e-64 AT5G11710 489 / 4e-166 ENTH/VHS family protein (.1)
Lus10021173
[exp]
87 / 8e-18 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1)
Lus10011810
[exp]
86 / 2e-17 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1)
Lus10040824
[exp]
80 / 6e-16 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1)
Lus10016556
[exp]
77 / 7e-15 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1)
Lus10040297
[exp]
54 / 1e-07 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1)
PFAM info
Representative CDS sequence
>Potri.002G231100.3 pacid=42777190 polypeptide=Potri.002G231100.3.p locus=Potri.002G231100 ID=Potri.002G231100.3.v4.1 annot-version=v4.1
ATGTGCTTTCTACGCCATTTACTTACGTTGTATTCTGTTTTTTTTTTATATATAATTTTGTTTTTTTACAGCAAGAGAGAGGTTAATAAGAAAGTGCTCA
AAGTTCCTTCGATAGAACAGAAGGTTCTTGATGCTACCAGTAATGAGCCTTGGGGTCCGCATGGAACACTTCTTGCAGATATTGCACAGGCATCTAGAAA
TTATCATGAATATCAGATGATCATGGCAGTTTTATGGAAACGGCTTAATGATACCGGCAGGAATTGGCGGCATGTCTACAAGGCGTTGACTGTTTTGGAA
TATCTGGTTGCTCATGGATCAGAGCGTGTCATAGATGAGATAAGGGAACATTCATATCAAATATCGACATTGTCAAATTTCCAATATATTGACTCCAGTG
GAAAGGACCAGGGTAATAATGTCAGGAAGAAATCCCAGAGTCTTGTGGCCCTGGTGAATGATAAAGAAAGGATAATTGAAGTTAGACAGAAGGCTGCTGC
TAACAGGGACAAGTTTCGCACATCTCCTGGTGGAATGTATAGACCTGGCTCTTATTCAAGTACAGGGGGGTATGATGACGATGGTCGCTATAAGGATGAG
GATCGAAATGGATATGGTTATGGCAAAGAAAGAGAATACAATTATAGGGATGATGACCGGTATGGTAAATACGGGGATTCGTATGGTCGTGATGCTGATC
GTTACGGTGAAGAACGGTATGGCAGAGATGGATATAGGGATGATGACTATCAGGGAAGAAGTCGAAGCATTGATGGTTATGGGTCAAGAAGCAGGAGCTC
CGACAGAGATAGAGATCGGGCTTTTGATGACGATGGTCAATCCTCATCTCGCGGCAGTGGTGCTAGAGCTGATGATCGGGCTCAGGATGGAAGGCGGCTT
GAGCGAAAACCTTCCGAGCAAAATATTGGTGGTCCTCCCAGCTATGAAGAAACTATAAGTGAATCCCGAAGCCCTGCTCACAGTGAAAGGAATGGGGAAA
CTTTAGCAGCACCTGCTCCTGGAGCTTCTCCACCTCCAAGCAATCCTGGACAAGCAAACACTTTTGATGTGAGGTCTCCATCTCCTGCAGACCGGGAAAT
TGAGGTGGCTGATGAATTTGATCCACGTGGTCCTGTTTCAGCTTCCCCCACAGCAACATCTGTTCCAACTGCCTCTGCTTTCCCTACCACCTCAAACAAT
GCTGAAATGGATTTACTCGGCTCTTTATCAGATGTTTTTGCTCCAAATCCATTGGCCATTGTGCCAGTCACTTCTGCAACATCATCCTCTGAAGCTGATG
CCCAGGCAAACTTTTCTGGATCCACTTTTGCTTCAACACAATCAGCCTCTAATATTATGAACCAGGCTTTCGAAGATCCATTTGGTGATAATCCTTTTAA
AGCTACTCCTACAGACAATTTCTCAGCCCAACAGCCAACTGCTTCGGCTGCCCCTTTCCAGCCTACTATGAATCAAAATGCTGAAATGCCCCATGCAGCT
GCACCACCAAATGGTGATGCATTCTCTGACATGACTTATTCAGCACCCAATGTTCAACCTCCTTCAACAAACTCACACTTTTTTCCTCAAGAAATGTCAA
GTTCTCATCCAGAAACTGATATTCTGGCAGACATTCTCTCATCATCCGGTCCTTATGCTGCAGCCTCACAGGCAGGTTTTTCATTTCCTTCTGGCCAACC
TCCACAGTTAGGGGCTAGCATGTACGGGAACTTCAATCCACCAGCAGGGAATATGGTACCGCCAGCAGTTCCACACATGGCTCCTCAGACCCAACAATTA
AGCAGTGCAAACTTCCTTCCACAGGGAGGATTCCCAGCTACTAACCCTTCCAACATGGCTCTACAACCTCCAGCTGGACCAGTGGCACATTTTAACAATG
GAAACTTTCCACAACAAGGTTCTGCAGCCCCAGTTGTCCCTCAATTTTCTCACCATACACTGACTGGATCAACCCCACAATTTAACAGTGGAAACTTTCA
CCCACAACGTGGCTCTACAGTCCCAGTTTCTTCACAATTTACTTACCAAACTCCAACCGCTTCATCTCCTCAACAGAAAGATGTCCTGGGTAATTTGTTT
TCTCAAGGATCGAACTCTTCCATGTCATCTCAGACAGCTCTTCCATCTTCAACAGGGTCGCTTGCTATAGTTCCTCTACCATCCAAAGACAAATTTGAGA
CCAAGTCAACAGTGTGGGCAGATACTATGAGTAGAGGGCTGGTCAATTTGAATATTTCTGGACCTAAAACCAATCCATTGGCTGACATTGGAGTTGATTT
TGATGCCCTTAATCGCAAGGAAAAGAGAATGGAAAAACAGCCCATGACTCCAGTTACATCTACTGTCACCATGGGCAAAGCTATGGGGTCTGGTACTGGG
ATGGGCCGACCTGGTGCAGGTGTTCTCAGCCCACCTCCAAACCCTATGATTGGTTCTGGTATGGGAATGGGTGTGGGTGCGGGCGTGAATATGGGCATTG
GTATGGGTGGTCGTCCTGGTTCAGGCATTGGCATGGGAGGTTATGGAGGAGTGCACCAGCCCATGGGTGTGGGTGTGGGTGTGGGAATGGGGATGATGAA
CATGGGAATGATGCCAGGTGGCCAGATGCCTCCTGGATCAGCCATGCCTGGTGGCTATAACCCCATGATGGGTTCTGGTGGTTACACTCCCCAACAACAT
TATGGCGGATATCGATGA
AA sequence
>Potri.002G231100.3 pacid=42777190 polypeptide=Potri.002G231100.3.p locus=Potri.002G231100 ID=Potri.002G231100.3.v4.1 annot-version=v4.1
MCFLRHLLTLYSVFFLYIILFFYSKREVNKKVLKVPSIEQKVLDATSNEPWGPHGTLLADIAQASRNYHEYQMIMAVLWKRLNDTGRNWRHVYKALTVLE
YLVAHGSERVIDEIREHSYQISTLSNFQYIDSSGKDQGNNVRKKSQSLVALVNDKERIIEVRQKAAANRDKFRTSPGGMYRPGSYSSTGGYDDDGRYKDE
DRNGYGYGKEREYNYRDDDRYGKYGDSYGRDADRYGEERYGRDGYRDDDYQGRSRSIDGYGSRSRSSDRDRDRAFDDDGQSSSRGSGARADDRAQDGRRL
ERKPSEQNIGGPPSYEETISESRSPAHSERNGETLAAPAPGASPPPSNPGQANTFDVRSPSPADREIEVADEFDPRGPVSASPTATSVPTASAFPTTSNN
AEMDLLGSLSDVFAPNPLAIVPVTSATSSSEADAQANFSGSTFASTQSASNIMNQAFEDPFGDNPFKATPTDNFSAQQPTASAAPFQPTMNQNAEMPHAA
APPNGDAFSDMTYSAPNVQPPSTNSHFFPQEMSSSHPETDILADILSSSGPYAAASQAGFSFPSGQPPQLGASMYGNFNPPAGNMVPPAVPHMAPQTQQL
SSANFLPQGGFPATNPSNMALQPPAGPVAHFNNGNFPQQGSAAPVVPQFSHHTLTGSTPQFNSGNFHPQRGSTVPVSSQFTYQTPTASSPQQKDVLGNLF
SQGSNSSMSSQTALPSSTGSLAIVPLPSKDKFETKSTVWADTMSRGLVNLNISGPKTNPLADIGVDFDALNRKEKRMEKQPMTPVTSTVTMGKAMGSGTG
MGRPGAGVLSPPPNPMIGSGMGMGVGAGVNMGIGMGGRPGSGIGMGGYGGVHQPMGVGVGVGMGMMNMGMMPGGQMPPGSAMPGGYNPMMGSGGYTPQQH
YGGYR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43160 ENTH/VHS family protein (.1.2.... Potri.002G231100
[exp]
0 1
AT5G16300 Vps51/Vps67 family (components... Potri.010G177200
[exp]
1.00 0.8776
AT1G21630 Calcium-binding EF hand family... Potri.005G102200
[exp]
2.23 0.8346
AT4G39920 TFCC, POR TUBULIN-FOLDING COFACTOR C, PO... Potri.005G074700
[exp]
5.91 0.7922 POR.1,TFCFC
AT2G43160 ENTH/VHS family protein (.1.2.... Potri.014G151300
[exp]
6.92 0.8214
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Potri.010G198250
[exp]
8.48 0.8360
AT1G48760 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4... Potri.012G055000
[exp]
14.49 0.7856
AT1G19300 ATGATL1, GATL1,... PARVUS, GAOLAOZHUANGREN 1, GAL... Potri.014G040300
[exp]
14.83 0.8444
AT5G16300 Vps51/Vps67 family (components... Potri.008G079700
[exp]
15.23 0.8269
AT3G59690 IQD13 IQ-domain 13 (.1) Potri.019G095700
[exp]
18.02 0.8025
AT4G29680 Alkaline-phosphatase-like fami... Potri.006G150900
[exp]
21.54 0.7964

Potri.002G231100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.