Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151101 [exp] 207 / 1e-54 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025526 [exp] 174 / 6e-45 AT1G28290 41 / 0.002 arabinogalactan protein 31 (.1.2) Lus10026740 [exp] 175 / 1e-44 ND 52 / 1e-06 Lus10009837 [exp] 47 / 1e-05 AT5G05500 171 / 1e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10040948 [exp] 47 / 2e-05 AT5G05500 176 / 9e-57 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [poplar] [flax] Transthyretin PF01190 [poplar] [flax] Pollen_Ole_e_1 Pollen protein Ole e 1 like CL0287 [poplar] [flax] PF04554 [poplar] [flax] Extensin_2 Extensin-like region
Representative CDS sequence Show only first row Show all	>Potri.002G231250.1 pacid=42778798 polypeptide=Potri.002G231250.1.p locus=Potri.002G231250 ID=Potri.002G231250.1.v4.1 annot-version=v4.1 ATGACAGGTTCTAGTGGCGGCCCCCTAAGGGGTCGTCTTTGGCCTCAATTGGCAGTGGCATTGACTATTCTCTTTGTTGCGAGCAATGTAGGTTCAGTCT CAGGAGATGCTTATGTTTACAGTTCTCCACCTCCACCACCGTATCTATACAAGTCTCCACCACCTCCTTCTCCATCTCCACCACCTCCTTATGAGTACAA GTCACCACCTCCTCCATCACCATCCCCACCACCACCATACATGTATAAGTCTCCACCACCTCCATCCCCATCCCCACCACCACCATACATGTATAAGTCT CCACCACCTCCATCCCCATCCCCACCACCACCATACATGTATAAGTCTCCACCACCTCCATCCCCATCACCCCCTCCACCATACATGTATAAATCCCCAC CCCCACCATCCCCATCCCCACCACCACCATACATGTACAAGTCTCCACCCCCTCCATCCCCATCACCCCCTCCACCATACATGTACAAGTCACCACCACC ACCCTCTCCATCCCCACCACCACCATACATGTACAAGTCACCACCACCACCTTCACCATCACCACCTCCACCTTATATATATAAATCTCCTCCACCCCCT TCTCCATCACCACCACCTCCCTACTACTATAAATCACCTCCACCCCCAGTACATTCTCCTCCTCCACCATATTACTACAAGTCACCACCACCACCTTCTC CCTCACCACCCCCACCATATTATTACAAGTCTCCACCACCACCCAAAAAATCACCACCTCCACCATATTACTATAAGTCACCACCTCCTCCCTCACCATC ACCACCCCCACCATACTACTACAAGTCCCCACCTCCACCTAAACATTCACCACCTCCACCTTATTACTACAAGTCACCACCACCACCCTCACCATCACCA CCCCCACCATACTACTACAAGTCCCCACCTCCACCTAAACATTCACCACCTCCACCATACTACTACAAGTCACCACCTCCACCCTCACCATCTCCTCCTC CTCCATACTACTACAAGTCTCCACCTCCTCCTTCACCGTCTCCTCCACCACCATACTATTATAAATCTCCTCCACCACCTTCTAAATCTCCTCCACCTCC TTATTACTACAAGTCTCCCCCACCTCCAACTAAGTCTCCACCTCCTCCAACACCATACTACTATAAATCCCCACCACCACCTTCACATCCTTTACCACCA CCCTATTATTACAAATCTCCACCACCACCTAAAGCTTTACCTCCTCCATACCACTACACTTCTCCACCTCCACCTGTCATTTACCCTCACCCCCACCACC ATGATTTAATGGTCAAAGTGGTAGGAAAGGTTTACTGCTACAAATGTTATGACTGGGGATATCCAGTGAAGTCACATGATAAAAAGCATCTAAAAGGTGC CGTGGTGGAGGTAACATGTAAAGAAGGTGCAAAAAAGATCAAGGCCTATGGTAAAACCAAAATCAATGGAAAATACAGCATCACACTGAAAGGTTTCAAT TATAGCAAATATGGAGGCAAGGCATGCAAAGCCAAACTTCACATGGCACCAAAGGGTTCACCATGCAGCATCCCAACTAAACTACACTGGGGTAACAAGG GTGCCTCTCTAAAGGTGAAGTCCAAGACAAAGTATGAAGTTGTGCTCTCAGCTAAACCGTTTGCTTATGCTCCTAAGACCCCTTACAAGGAGTGTGAGAA GTCCAAGCCCACTCCTGCTCCATACTACTACAAGTCACCTCCACCTCCTCCTCCAACTTACATTTATAAGTCACCACCACCTCCACCTTATCTTTACAAG TCACCCCCTCCACCACCATATATTTATAAATCACCACCACCACCAACTCATTCCCCACCACCACCATATTACTATAAATCACCACCACCTCCTTCACCAT CCCCACCACCTCCATACTATTATAAATCTCCACCACCACCATCTCCATCACCACCACCACCCTACTACTACAAATCGCCTCCACCACCTGTACACTCTCC TCCGCCACCATACTACTACAAATCACCTCCACCTCCAGTTCACTCTCCTCCCCCACCATACTACTACAAGTCTCCACCTCCACCATCTCCACCACCACCA TACTACTACAAATCACCCCCACCACCAGTTCATTCTCCTCCACCACCATACTATTACAAGTCACCACCTCCACCGGTTCATTCTCCTCCTCCACCATACT ACTACAAGTCACCTCCACCACCGGTTCACTCTCCTCCCCCACCATACTACTACAAGTCACCGCCTCCACCATCTCCATCACCACCACCACCATACTACTA CAAGTCACCACCTCCACCGGTTCATTCTCCTCCTCCACCATACTACTACAAGTCACCTCCACCACCGGTTCACTCTCCTCCCCCACCCTACTATTACAAG TCACCGCCTCCACCATCACCATCACCTCCCCCACCATACTACTACAAGTCACCACCCCCGCCGGTTCACTCTCCTCCCCCACCCTACTACTACAAGTCAC CACCTCCACCGTCACCATCACCACCACCACCATACTATTACAAATCACCTCCTCCACCGTCGCCATCTCCTCCACCACCTTATTATTACAAATCCCCACC ACCTCCATCCCCATCCCCTCCACCCCCGTACTATTACAAGTCACCACCACCACCATCACCATCACCACCACCACCGTACTACTACAAGTCACCCCCTCCA CCATCGCCATCTCCTCCTCCACCCTACCACTACAAGTCTCCCCCACCACCCTCTCCTTCACCACCACCTCCATACTATTACAAGTCTCCCCCACCTCCCT CACCATCTCCTCCACCACCCTACTACTACAAATCCCCACCTCCCCCCTCACCATCTCCTCCACCCCCATACTACTACAAATCCCCTCCTCCACCATCTCC ATCACCTCCACCACCTTACTACTACAAGTCTCCTCCACCACCATCTTCATCTCCCCCTCCTCCATATGTCTACAAGTCCCCACCTCCCCCTTCACCATCA CCACCTCCTCCCTACTACTACCATTCACCTCCCCCACCAGTGAAATCACCTCCACCCCCGGTTTACATTTATGCTTCTCCACCACCACCAACACACTACT AG
AA sequence Show only first row Show all	>Potri.002G231250.1 pacid=42778798 polypeptide=Potri.002G231250.1.p locus=Potri.002G231250 ID=Potri.002G231250.1.v4.1 annot-version=v4.1 MTGSSGGPLRGRLWPQLAVALTILFVASNVGSVSGDAYVYSSPPPPPYLYKSPPPPSPSPPPPYEYKSPPPPSPSPPPPYMYKSPPPPSPSPPPPYMYKS PPPPSPSPPPPYMYKSPPPPSPSPPPPYMYKSPPPPSPSPPPPYMYKSPPPPSPSPPPPYMYKSPPPPSPSPPPPYMYKSPPPPSPSPPPPYIYKSPPPP SPSPPPPYYYKSPPPPVHSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPKKSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPKHSPPPPYYYKSPPPPSPSP PPPYYYKSPPPPKHSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSKSPPPPYYYKSPPPPTKSPPPPTPYYYKSPPPPSHPLPP PYYYKSPPPPKALPPPYHYTSPPPPVIYPHPHHHDLMVKVVGKVYCYKCYDWGYPVKSHDKKHLKGAVVEVTCKEGAKKIKAYGKTKINGKYSITLKGFN YSKYGGKACKAKLHMAPKGSPCSIPTKLHWGNKGASLKVKSKTKYEVVLSAKPFAYAPKTPYKECEKSKPTPAPYYYKSPPPPPPTYIYKSPPPPPYLYK SPPPPPYIYKSPPPPTHSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPVHSPPPPYYYKSPPPPVHSPPPPYYYKSPPPPSPPPP YYYKSPPPPVHSPPPPYYYKSPPPPVHSPPPPYYYKSPPPPVHSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPVHSPPPPYYYKSPPPPVHSPPPPYYYK SPPPPSPSPPPPYYYKSPPPPVHSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPP PSPSPPPPYHYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSSSPPPPYVYKSPPPPSPS PPPPYYYHSPPPPVKSPPPPVYIYASPPPPTHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.002G231250 [exp]	0	1
AT5G67400		RHS19	root hair specific 19 (.1)		Potri.017G064100 [exp]	5.47	0.8555
					Potri.014G151101 [exp]	9.16	0.8215
					Potri.002G070101 [exp]	12.24	0.8172
AT4G25845			unknown protein		Potri.018G091900 [exp]	13.78	0.8759
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.009G070800 [exp]	14.00	0.8282	LRP1.2
AT3G22060			Receptor-like protein kinase-r...		Potri.004G032000 [exp]	22.13	0.8559
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175701 [exp]	26.15	0.8489
					Potri.005G190101 [exp]	33.19	0.8446
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.001G103600 [exp]	37.45	0.8131	GL3.1
					Potri.001G019795 [exp]	53.10	0.8619

Compare expression of checked genes

Potri.002G231250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.