Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05790 229 / 2e-71 lipase class 3 family protein (.1.2) AT2G42450 42 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G150800 [exp] 435 / 1e-148 AT1G05790 622 / 0.0 lipase class 3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019566 [exp] 197 / 2e-61 AT1G05790 263 / 3e-84 lipase class 3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.002G231567.1 pacid=42779735 polypeptide=Potri.002G231567.1.p locus=Potri.002G231567 ID=Potri.002G231567.1.v4.1 annot-version=v4.1 ATGACCTTATCTGTCTATACATATACAGAATCAGAAAACAGCTCTGGCTTGCTTTCCTCATTGCTGGGAGCTGGATGTGAATGCGATGGATATAGTTTGC GCATAGTTGGCCATTCCCTAGGAGGTGCGATTGCTGCTTTGCTAGGACTGAGGCTATATAAACTGTACCCAACGTTACATGTCTATGCATATGGACCCCT TACATGTGTGGATTTGGTCATAGCAGAAGCATGTTCAGAATTTGTTACAAGCATTGTACACAACAATGAATTTTCTACACGGCTTTCAGTTGGATCACTC CTACGGCTCCGCGCTGCTGCAATTGTGGCACTTGCACAAGATTCCAAAGCTGATAAAGCCTTGATTTGTAGGCTTGCTCGTCAATTCCTCTTTGTGAGCA TGAATCAAAGAGGGAGGATTGAGGTAGTTGATCCATCAGAGCTACATTCTGCAGCCACCACAGTAGAAGAACTGGATCACAAAGACTATGTGGGAAGCAA AAAGGCGGATCATAGTTATTCTCTCTGGAATGAATTAGACAGGACCAATAGTGGCGGTGATACAGATGACGACAATTTTGAAAATCCATTTTATGACAAG ACTGCTGTCATGAATTCATTAGATGATCCTGTATCACAATTTTTGGAAACTGTCCCCAGGGCTGAAAATGAGTCAGCTGGTGATGATGTAGAGATGTTTC TACCAGGCCTTGTGATTCATATGGTACCACAACAAAGGCATGTCAGTATGCCCTTCTGGAAAGGCTGGAGCGTTCAAGAGAAAATCTTTAAAGATATTGT TGTTTCACCAAATATGTTCTTAGATCATCTGCCTTGGAGATGTCACAACGCCATGAGAAAGGTGTTGGAATCTCAAAATGACAAAGGCCTGCTTGACGTA TCTCAAATCGTGTGA
AA sequence Show only first row Show all	>Potri.002G231567.1 pacid=42779735 polypeptide=Potri.002G231567.1.p locus=Potri.002G231567 ID=Potri.002G231567.1.v4.1 annot-version=v4.1 MTLSVYTYTESENSSGLLSSLLGAGCECDGYSLRIVGHSLGGAIAALLGLRLYKLYPTLHVYAYGPLTCVDLVIAEACSEFVTSIVHNNEFSTRLSVGSL LRLRAAAIVALAQDSKADKALICRLARQFLFVSMNQRGRIEVVDPSELHSAATTVEELDHKDYVGSKKADHSYSLWNELDRTNSGGDTDDDNFENPFYDK TAVMNSLDDPVSQFLETVPRAENESAGDDVEMFLPGLVIHMVPQQRHVSMPFWKGWSVQEKIFKDIVVSPNMFLDHLPWRCHNAMRKVLESQNDKGLLDV SQIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05790			lipase class 3 family protein ...		Potri.002G231567 [exp]	0	1
AT1G05790			lipase class 3 family protein ...		Potri.002G231534 [exp]	1.41	0.9190
AT1G05790			lipase class 3 family protein ...		Potri.002G231501 [exp]	3.46	0.8906
AT1G16260			Wall-associated kinase family ...		Potri.009G157201 [exp]	11.83	0.8841
AT1G47580			Pentatricopeptide repeat (PPR)...		Potri.002G130900 [exp]	14.86	0.8549
AT5G05800			unknown protein		Potri.001G238000 [exp]	16.79	0.8839
AT3G11310			unknown protein		Potri.001G182200 [exp]	19.62	0.8594
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Potri.004G229500 [exp]	23.36	0.7544
AT2G14255			Ankyrin repeat family protein ...		Potri.001G287000 [exp]	34.94	0.8015
AT5G05800			unknown protein		Potri.015G012100 [exp]	38.88	0.8819
AT3G44370			Membrane insertion protein, Ox...		Potri.013G087950 [exp]	41.67	0.7822

Compare expression of checked genes

Potri.002G231567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.