Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05800 524 / 0 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 519 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 300 / 4e-97 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 299 / 8e-97 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 300 / 4e-96 alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 265 / 7e-83 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 242 / 4e-76 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 214 / 2e-63 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 199 / 8e-59 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 194 / 4e-57 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G150700 [exp] 786 / 0 AT2G31690 491 / 7e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G051900 [exp] 317 / 6e-103 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 316 / 9e-103 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 315 / 4e-102 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G263200 [exp] 251 / 1e-77 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 249 / 2e-76 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 234 / 8e-72 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G137900 [exp] 228 / 2e-69 AT2G44810 543 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G153100 [exp] 224 / 4e-67 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025519 [exp] 546 / 0 AT2G31690 468 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Lus10026735 [exp] 513 / 6e-180 AT2G31690 472 / 1e-163 alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 234 / 8e-72 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10041165 [exp] 230 / 1e-70 AT2G44810 464 / 4e-164 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 228 / 1e-69 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 226 / 5e-69 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 224 / 4e-67 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 224 / 1e-66 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 223 / 2e-66 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 218 / 1e-64 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.002G231600.1 pacid=42777989 polypeptide=Potri.002G231600.1.p locus=Potri.002G231600 ID=Potri.002G231600.1.v4.1 annot-version=v4.1 ATGGCTTCTAAAGTTTTGATGCCAAACATTCCAAGTATGAATCATGTTGCATATTCAGGGAGCATGGTACCCCGGTCTCATTCTTCTGGGCAGCTTTGTT TGCCCAAGAAGAGGGCTGACACCACTGCTTTTAGATCACAGTCGCATGTTTCTTCTTTTATAACACCAGCCATGTCAACAGAATTAGCCAAGACTAGTTC TAGCACTAGCAGTTCTAGTTTGGCTCACATGTGGAGAGAGGTTCAAGGATGCAACAACTGGGACGGCCTTGTCGAACCCTTGCACCCTTTTCTCCGGCAA GAGATAATTCGATATGGGGAGTTTGTCACCGCTTGTTATGAGGCCTTTGACCTCAACCCTAAATCCAAAAGATATTTGACTTGCAAGTACGGGAAGAAGA ACTTGTTTAGAGAGGTTGGAATGGGAAATTCCGATTACGAAGTCACCAAGTACATATACGCCACTCCGGATGTCAACATTCCGATCCAAAATGAACCCTC TTGCGGGCGTTGGATTGGATATGTTGCTGTATCTTCAGATGATGCGGTTAGGAGACTTGGGAGGAGAGACATAGTCATTACATTTCGAGGAACAGTAACA AACCCGGAGTGGATATCAAATCTCATGAGCTCACTGACCCCGGCAAGGCTAGACCCCAATAATCCACGCCCAGAAGTGAAAGTAGAGTCTGGTTTTTTGA GTTTGTACACTTCAAATGAAAGTGATAACAAGTTCGGACTAGGAAGTTGCCGCGAACAGCTTCTATCCGAAGTATCAAGGCTCTTAAACAGGTACAAAGG TGAGGAACTTAGCATTTCCTTGGCAGGGCATAGTATGGGAAGTTCATTGGCTCTTCTCCTTGCTTATGATATTGCCGAGCTTGGATTGAATAGGCTCGAC CCGAAACTGGACGTGCCAGTAACGGTTTTTTCATTTGGAGGGCCAAGAGTAGGAAACTCCAGCTTCAAGGAGAGATGTGAGGAATTAGGGGTAAAAGTTT TGAGAATTGCAAATGTTAATGATCCCATCACAAAGTTACCAGGGGTTCTTCTCAACGAAAACCTTAGGGTTTTTGGAGGGAGATATGAGTTTCCATGGAG CTGTTCATGTTATGAACATGTGGGTGTTGAAATAGCACTAGACTTCTTCAACATGCAAAACCCTTCATGTGTTCATGACTTGGGATCCTATATCAGCTTA CTCAAATGTCTAAAGAGAGATCAGGTTCAAAAGGATGAAGAAAATCTTTTCAATCGAGCAAGGGAATCGATATTAAGTAGGGCTCAAAATATTAACATGG AGCCCTTGAAAAATGCTGCAAGCAATGTTGTAAACTTGGTTCAGTCTCAAAGAACTGAATTCTTGAAGGATGATACAATCTTAGGGTTGATGAACTCCTT CGCCTTGTATATTCTTTTATAG
AA sequence Show only first row Show all	>Potri.002G231600.1 pacid=42777989 polypeptide=Potri.002G231600.1.p locus=Potri.002G231600 ID=Potri.002G231600.1.v4.1 annot-version=v4.1 MASKVLMPNIPSMNHVAYSGSMVPRSHSSGQLCLPKKRADTTAFRSQSHVSSFITPAMSTELAKTSSSTSSSSLAHMWREVQGCNNWDGLVEPLHPFLRQ EIIRYGEFVTACYEAFDLNPKSKRYLTCKYGKKNLFREVGMGNSDYEVTKYIYATPDVNIPIQNEPSCGRWIGYVAVSSDDAVRRLGRRDIVITFRGTVT NPEWISNLMSSLTPARLDPNNPRPEVKVESGFLSLYTSNESDNKFGLGSCREQLLSEVSRLLNRYKGEELSISLAGHSMGSSLALLLAYDIAELGLNRLD PKLDVPVTVFSFGGPRVGNSSFKERCEELGVKVLRIANVNDPITKLPGVLLNENLRVFGGRYEFPWSCSCYEHVGVEIALDFFNMQNPSCVHDLGSYISL LKCLKRDQVQKDEENLFNRARESILSRAQNINMEPLKNAASNVVNLVQSQRTEFLKDDTILGLMNSFALYILL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05800		DGL	DONGLE, alpha/beta-Hydrolases ...		Potri.002G231600 [exp]	0	1
AT5G13200			GRAM domain family protein (.1...		Potri.003G165500 [exp]	5.83	0.7230
AT5G13200			GRAM domain family protein (.1...		Potri.003G165400 [exp]	7.21	0.7309
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Potri.011G138500 [exp]	9.16	0.7187	PMZ.1
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.006G250200 [exp]	16.24	0.6967
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.008G189000 [exp]	17.74	0.6951
					Potri.005G149001 [exp]	19.44	0.6951
					Potri.004G194250 [exp]	27.56	0.6810
AT2G02240		MEE66	maternal effect embryo arrest ...		Potri.006G267000 [exp]	27.74	0.6782
AT5G10625			unknown protein		Potri.006G276100 [exp]	29.39	0.6852
					Potri.005G170132 [exp]	32.40	0.5635

Compare expression of checked genes

Potri.002G231600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.