Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05805 274 / 6e-90 bHLH bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G43140 219 / 2e-69 bHLH bHLH129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G42280 139 / 6e-38 bHLH bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G51140 133 / 1e-35 bHLH bHLH122 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G35460 117 / 7e-31 bHLH bHLH080 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09180 113 / 3e-29 bHLH bHLH081 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G24260 69 / 8e-13 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 68 / 1e-12 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 67 / 2e-12 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT1G25330 66 / 2e-12 bHLH HAF, bHLH075, CESTA HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G150600 [exp] 541 / 0 AT1G05805 265 / 1e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G064700 [exp] 186 / 3e-55 AT2G42280 225 / 5e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G270000 [exp] 169 / 7e-49 AT2G42280 198 / 7e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G050500 [exp] 166 / 3e-48 AT2G42280 296 / 2e-98 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G057600 [exp] 147 / 2e-41 AT2G42280 278 / 3e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G207200 [exp] 147 / 2e-40 AT2G42280 221 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G017300 [exp] 143 / 4e-39 AT1G51140 237 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G079900 [exp] 119 / 2e-31 AT1G35460 228 / 1e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G107500 [exp] 119 / 2e-31 AT1G35460 223 / 1e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025518 [exp] 330 / 7e-112 AT1G05805 242 / 2e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026733 [exp] 203 / 6e-65 AT2G43140 179 / 2e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10037484 [exp] 145 / 4e-40 AT2G42280 191 / 2e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031255 [exp] 137 / 3e-39 AT2G42280 172 / 5e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10015704 [exp] 141 / 1e-38 AT2G42280 194 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031826 [exp] 137 / 3e-37 AT1G51140 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021023 [exp] 121 / 2e-30 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 92 / 1e-20 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10026008 [exp] 68 / 2e-12 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 68 / 2e-12 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G231700.1 pacid=42778257 polypeptide=Potri.002G231700.1.p locus=Potri.002G231700 ID=Potri.002G231700.1.v4.1 annot-version=v4.1 ATGTATCAACAGCCGTCGTCGTCATCCTCGTCGCCACAAAAACCTACGGTCCCAAGTGGGCTGACCAGGTATGGCTCAGCCCCAGGGTCTTTTTTAACCA GAGCTGTTGATTCAGTCATCGGGGTTGACCGTGAACTCTCTGGCCTTGGATCGACTTCCCTTGTGGGCAGTCGACAATACTTCTCTGGTGACTCGCCCTC GGTAACCTCAGAGTCAACTTGCAAAGTCAACCCTTCCAGCTGCGATCCAAAAGCACCCAAAAGTGGTGGCAGTAGCGGCAGTTTGCAGAGGTCGTACGGC TTTAATGAGGTAGCACATGGTGCTGGATCTTTGGTGCGGCAGAGGAGCTCACCTGCTGGATTTCTAAGCCATCTCGCCACTGAAAATGGTGGTTTCTCAA TTACAAGGGAATCTGGAGGCTATAACGCTCACAGTGGCCCTGGTGGTGGCCACTCGGTATCAAGGTTGAAGCCTCAGTTGAGCTTTACTAGGCAAGAGTC TCTTTCTCAGATATCTGAAGTTAGTGAGAATGTTGTTGAAGGCATTGGCTCTGACAATAACCACCAGAACTGCACTCATTCTTATTCTGCTGCTGGCTTT GGTATGGAATCTTGGGACAATCCAAATTCCATTGTATTCTCTGGACCCCCCTCGAAACAAGCTAGGAATGGAGATGGAGACATTTATAGCTGTTTCAATG GCTTAGAAACTCAGTTTAGCCTGCCTCAGACAAGTCTTGAGATAGAAACAGTGGAGAAGCTGCTACATGTTCCTGAAGACTCTGTTCCTTGCAAAATCCG TGCTAAGCGTGGCTTTGCCACTCATCCAAGAAGCATTGCTGAAAGGGAGAGAAGAACCAGAATAAGTGGGAAACTGAAGAAACTACAAGATCTCGTTCCG AACATGGATAAGCAAACAAGTTATGCAGACATGCTGGATTTCGCAGTGCAGCATATCAAAGGCCTTCAAAATGAGGTGGAGAAACTCCACAAAGAAATGG AAAATTGTACCTGTGGATGCGAAAAATCAACCCCATGA
AA sequence Show only first row Show all	>Potri.002G231700.1 pacid=42778257 polypeptide=Potri.002G231700.1.p locus=Potri.002G231700 ID=Potri.002G231700.1.v4.1 annot-version=v4.1 MYQQPSSSSSSPQKPTVPSGLTRYGSAPGSFLTRAVDSVIGVDRELSGLGSTSLVGSRQYFSGDSPSVTSESTCKVNPSSCDPKAPKSGGSSGSLQRSYG FNEVAHGAGSLVRQRSSPAGFLSHLATENGGFSITRESGGYNAHSGPGGGHSVSRLKPQLSFTRQESLSQISEVSENVVEGIGSDNNHQNCTHSYSAAGF GMESWDNPNSIVFSGPPSKQARNGDGDIYSCFNGLETQFSLPQTSLEIETVEKLLHVPEDSVPCKIRAKRGFATHPRSIAERERRTRISGKLKKLQDLVP NMDKQTSYADMLDFAVQHIKGLQNEVEKLHKEMENCTCGCEKSTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.002G231700 [exp]	0	1
AT3G22530			unknown protein		Potri.008G154100 [exp]	1.00	0.9225
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.007G100600 [exp]	1.41	0.9197
					Potri.014G013800 [exp]	3.60	0.8747
AT5G05190			Protein of unknown function (D...		Potri.019G061400 [exp]	3.87	0.8912
AT3G19910			RING/U-box superfamily protein...		Potri.005G090800 [exp]	5.29	0.8896
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	6.92	0.8973	Pt-RGA.54
AT4G10790			UBX domain-containing protein ...		Potri.001G085600 [exp]	7.74	0.9055
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	9.79	0.8908
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Potri.019G054300 [exp]	12.00	0.8894
AT3G20600		NDR1	non race-specific disease resi...		Potri.001G418000 [exp]	12.44	0.8188

Compare expression of checked genes

Potri.002G231700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.