Plant FIBer expression Database

Pt-PRN.2 (Potri.002G231900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PRN.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43120 452 / 5e-161 RmlC-like cupins superfamily protein (.1)
AT3G59220 394 / 1e-138 ATPIRIN1, PRN1, PRN pirin (.1)
AT1G50590 373 / 5e-130 RmlC-like cupins superfamily protein (.1)
AT3G59260 352 / 2e-122 pirin, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G150200
[exp]
612 / 0 AT2G43120 461 / 9e-165 RmlC-like cupins superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001159
[exp]
500 / 6e-180 AT2G43120 436 / 1e-154 RmlC-like cupins superfamily protein (.1)
Lus10019561
[exp]
498 / 3e-179 AT2G43120 436 / 9e-155 RmlC-like cupins superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF02678 Pirin Pirin
CL0029 Cupin PF05726 Pirin_C Pirin C-terminal cupin domain
Representative CDS sequence
>Potri.002G231900.1 pacid=42778475 polypeptide=Potri.002G231900.1.p locus=Potri.002G231900 ID=Potri.002G231900.1.v4.1 annot-version=v4.1
ATGAGAGCTTCTATATATCGAAACTTTCTTTTCAGATTACATCCAACAACTACTGCCAAGGCTAGTAAGATTACCAACCATACCAGGAATATCATGTCTG
AATCAGATCAATCCACTGGTTTCAGCACACCCAGATTGGTGACCAAGAAGGTCCTGGCCAAGCTCCAACATGAAGGTGAGGGTGCTGTCGTTAGGAGAAG
CATTGGAAGGAGTGAGCTGAAGTTCTTGGATCCTTTTCTCATGTTGGATGATTTTTCAGTGTCCCCCCCTGCTGGATTTCCTGATCATCCTCACAGAGGT
TTTGAAACTGTTACATACATGCTGCAGGGAGGCATCACTCATCAGGATTTTGCAGGACACAAGGGTACAATCCATACCGGAGATGTGCAGTGGATGACGG
CAGGAAGAGGTATCATCCACTCAGAAATGCCTGCTGGAGAAGGTGAGCAGAAGGGTCTGCAGCTGTGGATAAATCTATCTTCCCAGGACAAAATGATTGA
ACCAGGGTATCAAGAACTTTTAAGCGATGACATAAAAACAGCAGAGAAAGATGGGGTTGAAGTGAGAATTATAGCAGGGAAATCAATGGGAGTGCAGTCT
CCAGTTTATACCAGGACACCAACAATGTATCTGGATTTCACTCTGAAACCTAGAGCTCAAATGAATCAAGGTATTCCAGAATCATGGAATGGGTTTGTGT
ATATTATTGAAGGTGAAGGGGTCTTTGGCAAGCCAGCTTCTTCGTCTGTAACTGCTCATCATGTCCTGGTTTTAGGTCCTGGAGATGGTTTAAGTGTGTG
GAACAGGTCTTCTAAGCCACTGCGATTTGTGCTGATTGCCGGACAGCCGATTAACGAGCCTGTGGTTCAGTATGGACCTTTTGTGATGAACACACAGGCA
GAAATTGATCAGACCATTGAGGACTACCACTATAGCAAAAATGGGTTTGAAATGGCCAAGTATTGGAGATCCCAATGA
AA sequence
>Potri.002G231900.1 pacid=42778475 polypeptide=Potri.002G231900.1.p locus=Potri.002G231900 ID=Potri.002G231900.1.v4.1 annot-version=v4.1
MRASIYRNFLFRLHPTTTAKASKITNHTRNIMSESDQSTGFSTPRLVTKKVLAKLQHEGEGAVVRRSIGRSELKFLDPFLMLDDFSVSPPAGFPDHPHRG
FETVTYMLQGGITHQDFAGHKGTIHTGDVQWMTAGRGIIHSEMPAGEGEQKGLQLWINLSSQDKMIEPGYQELLSDDIKTAEKDGVEVRIIAGKSMGVQS
PVYTRTPTMYLDFTLKPRAQMNQGIPESWNGFVYIIEGEGVFGKPASSSVTAHHVLVLGPGDGLSVWNRSSKPLRFVLIAGQPINEPVVQYGPFVMNTQA
EIDQTIEDYHYSKNGFEMAKYWRSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43120 RmlC-like cupins superfamily p... Potri.002G231900
[exp]
0 1 Pt-PRN.2
AT2G01430 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-... Potri.010G112600
[exp]
3.16 0.7178
AT5G01380 Trihelix Homeodomain-like superfamily p... Potri.006G101400
[exp]
3.60 0.7230
AT3G47550 RING/FYVE/PHD zinc finger supe... Potri.010G169200
[exp]
6.70 0.6758
AT4G15093 catalytic LigB subunit of arom... Potri.004G135200
[exp]
6.92 0.6768
AT5G63770 ATDGK2 diacylglycerol kinase 2 (.1.2) Potri.005G070900
[exp]
10.09 0.7043
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Potri.001G136200
[exp]
13.19 0.6860
AT5G01960 RING/U-box superfamily protein... Potri.013G160000
[exp]
14.07 0.6438
AT3G04090 SIP1A, SIP1;1 small and basic intrinsic prot... Potri.013G053400
[exp]
15.62 0.6944 SIP1.3
AT4G22120 ERD (early-responsive to dehyd... Potri.004G005900
[exp]
17.60 0.6751
AT3G07490 AtCML3, AGD11 calmodulin-like 3, ARF-GAP dom... Potri.006G065900
[exp]
19.41 0.6249 Pt-CBP1.3

Potri.002G231900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.