Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43080 456 / 6e-164 AT-P4H-1 P4H isoform 1 (.1) AT1G20270 229 / 2e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 229 / 3e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 227 / 1e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G17720 220 / 8e-71 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G28480 189 / 3e-58 Oxoglutarate/iron-dependent oxygenase (.1.2) AT3G28490 186 / 1e-57 Oxoglutarate/iron-dependent oxygenase (.1) AT3G06300 180 / 6e-55 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT5G18900 179 / 2e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35820 158 / 7e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108000 [exp] 230 / 1e-74 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.005G245300 [exp] 220 / 7e-71 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G060800 [exp] 206 / 8e-65 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G075100 [exp] 193 / 6e-60 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.008G197700 [exp] 191 / 2e-59 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075300 [exp] 190 / 2e-59 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.007G052600 [exp] 161 / 7e-48 AT4G33910 353 / 4e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G091000 [exp] 152 / 1e-44 AT4G33910 431 / 9e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G296800 [exp] 149 / 5e-43 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031048 [exp] 400 / 2e-142 AT2G43080 406 / 7e-145 P4H isoform 1 (.1) Lus10035434 [exp] 356 / 7e-122 AT2G43080 365 / 4e-125 P4H isoform 1 (.1) Lus10028404 [exp] 230 / 1e-74 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 230 / 1e-74 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005620 [exp] 208 / 1e-65 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032183 [exp] 205 / 1e-64 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10014502 [exp] 192 / 8e-60 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10017249 [exp] 194 / 1e-59 AT1G20270 455 / 3e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10012014 [exp] 185 / 8e-57 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 184 / 2e-56 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.002G232100.1 pacid=42777523 polypeptide=Potri.002G232100.1.p locus=Potri.002G232100 ID=Potri.002G232100.1.v4.1 annot-version=v4.1 ATGGCCTCTTCCATGAAAATCGTATTCGGACTCCTAGCTTTTGTCACCGCTGGAATGATCGTAGGTGCTTTCTTTCAATTAGCATTTATACTAAAGCTGG AAGACTCGTATGGCACCAAGTTTCCATCATTTAAAAGAGTGCGAAAACTTCAAAGTGATGCCTATCTTCAGTTGCCGAGAGGGATTTCTCATTGGGATAA TGACACAGAAGCGGCAGTTTTACGAATTGGATATGTCAAACCTGAAATTATCAGCTGGTCACCGCGAATTATTGTACTCCATGATTTTTTGAGCTCAGAG GAATGTGACTATCTTAGAGCCCTAGCTAAACCTCGGCTTCGAATTTCTACTGTGGTGGATGTAAAAACAGGGAAGGGAATAGAAAGCAAGGTAAGGACAA GTTCTGGAATGTTTCTGAGCTCTGAAGAGAAAACGTATCAAGTGGTACAGGCAATTGAAAAAAGGATTTCAGTCTATTCTCAAGTGCCCATTGAAAATGG GGAGCTCATCCAAGTTTTAAGGTATGAAAAGAATCAGTATTACAAGCCCCATCATGACTACTTTTCTGATACTTTTAACTTGAAGCGTGGTGGTCAGCGA GTAGCAACAATGCTGATGTACTTAAGTGACAATGTTGAGGGGGGAGAAACATATTTCCCAATGGCTGGTTCAGGTAAATGCAGTTGTGGCGGAAAAGTTG TGGATGGGTTAAGTGTAAAACCTATCAAAGGAAATGCAGTTCTTTTCTGGAGCATGGGACTAGATGGCCAGTCGGATCCTAGCAGCATACATGGAGGATG TGAGGTTCTGTCAGGGGTGAAGTGGTCAGCTACAAAATGGATGAGGCAAAGAGCTACTTTCTGA
AA sequence Show only first row Show all	>Potri.002G232100.1 pacid=42777523 polypeptide=Potri.002G232100.1.p locus=Potri.002G232100 ID=Potri.002G232100.1.v4.1 annot-version=v4.1 MASSMKIVFGLLAFVTAGMIVGAFFQLAFILKLEDSYGTKFPSFKRVRKLQSDAYLQLPRGISHWDNDTEAAVLRIGYVKPEIISWSPRIIVLHDFLSSE ECDYLRALAKPRLRISTVVDVKTGKGIESKVRTSSGMFLSSEEKTYQVVQAIEKRISVYSQVPIENGELIQVLRYEKNQYYKPHHDYFSDTFNLKRGGQR VATMLMYLSDNVEGGETYFPMAGSGKCSCGGKVVDGLSVKPIKGNAVLFWSMGLDGQSDPSSIHGGCEVLSGVKWSATKWMRQRATF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Potri.002G232100 [exp]	0	1
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Potri.007G101700 [exp]	2.23	0.7505
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Potri.005G021800 [exp]	12.60	0.6744
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.002G072100 [exp]	24.33	0.5842
AT4G18400			unknown protein		Potri.004G133260 [exp]	47.24	0.5853
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Potri.018G016200 [exp]	55.92	0.6183
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108601 [exp]	102.66	0.5884
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015966 [exp]	105.34	0.5830
AT1G56300			Chaperone DnaJ-domain superfam...		Potri.013G010800 [exp]	111.18	0.5454
AT5G02220			unknown protein		Potri.008G057600 [exp]	121.18	0.5932
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108401 [exp]	131.68	0.5765

Compare expression of checked genes

Potri.002G232100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.