Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43060 79 / 1e-18 bHLH AtIBH1, bHLH158 ILI1 binding bHLH 1 (.1) AT1G27740 45 / 1e-05 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT4G30180 44 / 2e-05 bHLH bHLH146 sequence-specific DNA binding transcription factors;transcription regulators (.1) AT5G43175 44 / 2e-05 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67060 44 / 2e-05 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 44 / 4e-05 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G33880 42 / 0.0001 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT3G50330 42 / 0.0001 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G57780 41 / 0.0002 P1R1 P1R1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149800 [exp] 188 / 2e-61 AT2G43060 82 / 3e-20 ILI1 binding bHLH 1 (.1) Potri.018G099100 [exp] 46 / 3e-06 AT4G30410 135 / 1e-40 sequence-specific DNA binding transcription factors (.1.2) Potri.006G177000 [exp] 45 / 6e-06 AT4G30410 142 / 2e-43 sequence-specific DNA binding transcription factors (.1.2) Potri.002G125000 [exp] 45 / 9e-06 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G027300 [exp] 45 / 1e-05 AT5G67060 141 / 6e-41 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G118300 [exp] 43 / 2e-05 AT2G47270 62 / 2e-13 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.016G120800 [exp] 43 / 3e-05 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.007G044600 [exp] 42 / 8e-05 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G191800 [exp] 42 / 0.0001 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026730 [exp] 97 / 8e-26 AT2G43060 97 / 4e-26 ILI1 binding bHLH 1 (.1) Lus10025511 [exp] 91 / 3e-23 AT2G43060 98 / 9e-27 ILI1 binding bHLH 1 (.1) Lus10012670 [exp] 45 / 7e-06 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009745 [exp] 44 / 2e-05 AT3G21330 112 / 2e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 44 / 4e-05 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002213 [exp] 43 / 4e-05 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10003500 [exp] 43 / 8e-05 AT3G21330 192 / 5e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042647 [exp] 43 / 8e-05 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001068 [exp] 42 / 0.0002 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 42 / 0.0002 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G232500.1 pacid=42777386 polypeptide=Potri.002G232500.1.p locus=Potri.002G232500 ID=Potri.002G232500.1.v4.1 annot-version=v4.1 ATGCTATACTACTCCTACTGCTATAGTTTTGAAACAAATTCCCACTACAAAACCCTAATATTCACTTCACAGCTTTCTCTCTTTTATCTTTTCTTGGAAC TTGCAACCATGACTTCAAAGCATGTAATAGCTACAAGACACACAAAGTCCATCAAGACCAGGTTTGCCAGTAGATTTCTCAGATCCCTTTTGAGAATGAA AAGGAGTGATAGATTTGGTGGTTCCCAATCAAATGAAGGAGTCAGGAAAAGGAGTACTCATAGAATAAAGATTGCTGCTTATGCATCGATGGCTCGTGCA GTTGGTCCAAGCAGAACTTGGAGCCGAGCCCTTCTTTTCAAGCTTAGAAACCGAGCCAGAATCCAGGGAGTCTTGAGAAAGAGATGCTTCGTTTCAAAGA AGAATAAGAAGAAGAGGGTTATAAGAAATAAGGTGATAATCTCAAGAGAACCAAGTCGTACTGATACTCTTCGAAAGCTTGTTCCTGGAGGAGGTTCCAT GGATATTTGCTGTTTGTTGGAAGAAACTGCTCATTACATAAAATGCCTTGCCACTCAGGTTAAGGTGATGCAAAGTATAGCCGATCAATCACTACTCTAA
AA sequence Show only first row Show all	>Potri.002G232500.1 pacid=42777386 polypeptide=Potri.002G232500.1.p locus=Potri.002G232500 ID=Potri.002G232500.1.v4.1 annot-version=v4.1 MLYYSYCYSFETNSHYKTLIFTSQLSLFYLFLELATMTSKHVIATRHTKSIKTRFASRFLRSLLRMKRSDRFGGSQSNEGVRKRSTHRIKIAAYASMARA VGPSRTWSRALLFKLRNRARIQGVLRKRCFVSKKNKKKRVIRNKVIISREPSRTDTLRKLVPGGGSMDICCLLEETAHYIKCLATQVKVMQSIADQSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.002G232500 [exp]	0	1
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G021000 [exp]	2.44	0.7562
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G011300 [exp]	3.74	0.7712
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.004G216900 [exp]	4.89	0.6686
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Potri.014G149800 [exp]	9.89	0.8175
AT4G19450			Major facilitator superfamily ...		Potri.001G128200 [exp]	11.00	0.6692
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.001G105600 [exp]	15.19	0.6787	ATGSTT1.3
AT5G05710			Pleckstrin homology (PH) domai...		Potri.008G066700 [exp]	21.21	0.6329
AT2G29900		PS2	Presenilin-2 (.1)		Potri.015G058301 [exp]	22.20	0.6543
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.006G040100 [exp]	22.22	0.6254
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.010G237400 [exp]	32.78	0.6900	NFU4.2

Compare expression of checked genes

Potri.002G232500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.