Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31660 1498 / 0 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT3G59020 1438 / 0 ARM repeat superfamily protein (.1.2) AT1G26170 78 / 3e-14 ARM repeat superfamily protein (.1) AT3G17340 69 / 1e-11 ARM repeat superfamily protein (.1.2) AT2G46520 63 / 8e-10 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT3G08960 51 / 6e-06 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149600 [exp] 1800 / 0 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.014G100000 [exp] 74 / 4e-13 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.010G152700 [exp] 74 / 4e-13 AT3G17340 1051 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G172700 [exp] 71 / 5e-12 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.008G109300 [exp] 67 / 7e-11 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.T108626 [exp] 65 / 3e-10 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.016G119900 [exp] 59 / 2e-08 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025509 [exp] 1607 / 0 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10026726 [exp] 1118 / 0 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10026727 [exp] 462 / 1e-154 AT2G31660 480 / 6e-162 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10030241 [exp] 67 / 6e-11 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10005969 [exp] 57 / 1e-08 AT2G46520 250 / 2e-77 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10004753 [exp] 54 / 8e-07 AT3G08960 1432 / 0.0 ARM repeat superfamily protein (.1) Lus10007842 [exp] 53 / 1e-06 AT3G08960 1493 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain CL0020 [poplar] [flax] TPR PF08506 [poplar] [flax] Cse1 Cse1
Representative CDS sequence Show only first row Show all	>Potri.002G232600.2 pacid=42777858 polypeptide=Potri.002G232600.2.p locus=Potri.002G232600 ID=Potri.002G232600.2.v4.1 annot-version=v4.1 ATGGACATCCCTAGCCTCGCTGTTGTCCTACAAGCTGCTCTTAGCCCCAATCCTGACGAACGCAAAGACGCCGAGCAAAGACTCGATCAGTTTCAGTACA CACCTCAGCATCTTGTGAGGTTGCTGCAGATTATTGTGGACAATAATTGCAATATGGCTGTGCGTCAAGTAGCTAGTATTCACTTCAAGAACTTCATTGC CAAGAATTGGGCACCCCATGAGCCTGGTGAGTTACCAAAGATCTCTGCGAGTGATAAAGCTATGGTGAGGGATCACATCCTTGTGTTTCTTGTGCGCGTT CCGCCTTTATTGAGGGTACAACTGGGTGAGTGTCTTAAAACAATGATCCATGCTGATTACCCAGAGCAATGGCCTCACCTTCTGGATTGGATCAAGCTTA ACCTACAAGATCAGCAAGTATATGGAGCTCTATTTGTGTTGAGGATTCTTTCTAGAAAATACGAGTTCAAGTCGGATGAGGAGAGGACACCTGTTTATCG CATTGTTGAGGAGACATTCTCTCATCTTCTCAACTTATTCAACAAGCTTGTCCAGATACCGAATCCTTCTCTGGAAGTAGCAGATTTGATCAAGCTTATT TGTAAAATATTCTGGTCATCTATATATCTGGAGATTCCAAAGCAACTCTTGGATCCAAATGTCTTCAATGCTTGGATGGTTCTTTTCTTAAATGTTTTGG AGAGGCCTGTTCCTGTAGAGGGCCAGCCTGTGGATCCTGAGCTTAGGAAGTCATGGGGATGGTGGAAGGTGAAGAAATGGACGGTTCACATTTTGAACAG GCTATACACTCGGTTTGGAGACTTGAAACTTCAAAACCCAGAAAACAAAGCTTTCGCCCAGATGTTTCAGAATAATTTTGCTGCGAAAATTTTGGAGTGC CACTTGAATCTATTGAACGTGATTCGTGCTGGTGGCTATTTGCCTGACAGAGTTATCAACCTAATTCTTCAGTATCTAAGCAACAGCATCTCAAAGAATA GCATGTATAATCTACTGCAACCAAGACTTGACATTCTTCTCTTTGAGATAGTTTTTCCTCTTATGTGCTTCAATGACAATGATCAAAAACTCTGGGATGA AGACCCACATGAGTATGTGAGAAAGGGTTATGATATCATTGAAGATTTGTATAGTCCCAGGACCGCTTCCATGGACTTTGTCAGTGAGTTGGTTAGAAAA CGTGGGAAGGAGAACCTTCAAAAGTTCATTCTATTCATAGTGGAAATTTTTAAGAGATATGATGAAGCACCAGTGGAATATAAACCCTATCGACAAAAGG ATGGTGCTCTACTTGCTATTGGAGCACTTTGTGATAAACTGAAACAGACTGACCCTTACAAATCTGAACTGGAGCGTATGTTAGTGCAACATGTTTTCCC CGAGTTCAGCAGTCCTGCTGGCCACCTTAGAGCAAAGGCTGCATGGGTTGCAGGACAATATGCCCACATTAACTTTTCAGACCAGAACAATTTCCGTAAA TCCTTGCACAGTGTCGTTTCTGGGTTGCGTGATCCAGAGCTTCCTGTGCGTGTTGACTCAGTTTTTGCATTGCGATGCTTTGTTGAAGCCTGCAAAGATT TAAATGAGATTCGTCCGATTCTTCCTCAACTTCTTGATGAGTTCTTCAAACTAATGAATGAGGTAGAGAATGAGGACCTGGTCTTTACTTTGGAAACTAT AGTGGACAAATTTGGGGAGGAGATGGCACCATATGCTCTTGGATTATGCCAGAATTTGGCAGCTGCATTTTGGAGATGTATGAATACCGCAGAAGCTGAC GACGAAGCTGATGATCCTGGTGCTTTAGCAGCAGTTGGTTGTTTGCGTGCAATAAGCACAATTCTTGAGTCAGTCAGCAGGCTACCTGATCTTTTTGTCC AAGTTGAGCCAACTTTGCTTCCTATAATGCGTAGAATGTTGACAACTGATGGCCAAGAGGTGTTTGAGGAAGTTTTGGAAATTGTTTCATATATGACCTT TTTCTCTCCAATAATATCTACGGAAATGTGGTCTCTTTGGCCCTTGATGATTGAAGCATTGGCAGAATGGGCAATTGATTTCTTTCCAAACATTCTGGTT CCACTGGACAACTATATATCTAGGGGGACTGCACATTTCCTTGCATGCAGGGAACTGGATTACCAACAAAGCCTTTGGAACATGATTTCATCGATAATGG CAGATGGAAACTTGGAAGACAGTGACATAGAACCAGCACCGAAGCTTATTGAAGTGGTTTTCCAGAACTGTAAAGGGCAAGTGGATCAGTGGGTTGAGCC ATATATGAGAATCACTGTTCAGCGGTTGCGTCGAACTGATAAATTATACTTGAAATGTCTTCTTATGCAAGTGGTTGCAGATGCTCTTTACTACAATGCA GCTTTGACCCTCAGCATATTGCACAGACTTGGTGTTGCTACAGAGATCTTTACTCTTTGGTTCCAGATGTTGGAACAAGTGAAAAAGAGTGGTGTACGGG CAAATTTTAAAAGGGAACATGATAAGAAAGTTTGTTGTTTGGGACTGACATCACTACTTGCTCTCCCTGCGGATCAATTACCAGGAGATGCTCTGGGGCG TGTTTTCAGAGCCACTCTTGATCTCCTTGTTCAATACAAAGATCAACTTGCAGAAGCTGCAAAGGAGGAAGAAGCTGAAGATCTTGATGATATGGATGGT TTCCAGACTGATGATGAAGATGATGACGCTGATGAGTCTGACAAGGAAATGGGAGTTGATGCTGAGGATGGGGATGAAGCTGAAAGCATTAAACTTCAAA AATTAGCTGCACAGGCAAAATCTTTCCGTCCACATGATGACGATGACGATGACTCAGATGATGACTATAGTGACGATGAGGATTTGCAATCACCAATTGA TGAGGTGGACCCTTTCATTTTCTTTGTGGACACAATCAAAGCCATGCAAGCATCAGATCCATTAAGGTTTCAGAATCTTACCCAGACACTAGACTTTCAT TTTCAAGCGCTGGCAAATGGTGTTGCCGAGCATGCTGAGCAGAGGAGGGTAGTGATTGAAAAAGAAAAATTGGAGAAGGCATCCACTGCTGGTGCTTCAT AA
AA sequence Show only first row Show all	>Potri.002G232600.2 pacid=42777858 polypeptide=Potri.002G232600.2.p locus=Potri.002G232600 ID=Potri.002G232600.2.v4.1 annot-version=v4.1 MDIPSLAVVLQAALSPNPDERKDAEQRLDQFQYTPQHLVRLLQIIVDNNCNMAVRQVASIHFKNFIAKNWAPHEPGELPKISASDKAMVRDHILVFLVRV PPLLRVQLGECLKTMIHADYPEQWPHLLDWIKLNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFSHLLNLFNKLVQIPNPSLEVADLIKLI CKIFWSSIYLEIPKQLLDPNVFNAWMVLFLNVLERPVPVEGQPVDPELRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENKAFAQMFQNNFAAKILEC HLNLLNVIRAGGYLPDRVINLILQYLSNSISKNSMYNLLQPRLDILLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRK RGKENLQKFILFIVEIFKRYDEAPVEYKPYRQKDGALLAIGALCDKLKQTDPYKSELERMLVQHVFPEFSSPAGHLRAKAAWVAGQYAHINFSDQNNFRK SLHSVVSGLRDPELPVRVDSVFALRCFVEACKDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEAD DEADDPGALAAVGCLRAISTILESVSRLPDLFVQVEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPIISTEMWSLWPLMIEALAEWAIDFFPNILV PLDNYISRGTAHFLACRELDYQQSLWNMISSIMADGNLEDSDIEPAPKLIEVVFQNCKGQVDQWVEPYMRITVQRLRRTDKLYLKCLLMQVVADALYYNA ALTLSILHRLGVATEIFTLWFQMLEQVKKSGVRANFKREHDKKVCCLGLTSLLALPADQLPGDALGRVFRATLDLLVQYKDQLAEAAKEEEAEDLDDMDG FQTDDEDDDADESDKEMGVDAEDGDEAESIKLQKLAAQAKSFRPHDDDDDDSDDDYSDDEDLQSPIDEVDPFIFFVDTIKAMQASDPLRFQNLTQTLDFH FQALANGVAEHAEQRRVVIEKEKLEKASTAGAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.002G232600 [exp]	0	1
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.001G004800 [exp]	1.00	0.8439
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	5.29	0.8280
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	6.32	0.8021	Pt-LON_ARA_ARA.2
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	6.92	0.8168
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Potri.005G211600 [exp]	7.34	0.7910
AT5G14580			polyribonucleotide nucleotidyl...		Potri.001G347900 [exp]	10.48	0.7923
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	12.40	0.7700
AT1G26460			Tetratricopeptide repeat (TPR)...		Potri.010G159100 [exp]	13.41	0.7368
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.002G203700 [exp]	16.12	0.7721
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	16.73	0.7821

Compare expression of checked genes

Potri.002G232600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.