Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05830 1261 / 0 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 1235 / 0 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT5G53430 255 / 2e-70 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 248 / 4e-68 SDG16, ATX4 SET domain protein 16 (.1) AT3G61740 247 / 8e-68 SDG14, ATX3 SET domain protein 14 (.1.2) AT5G42400 141 / 8e-34 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT3G14740 108 / 3e-25 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G77800 100 / 3e-21 PHD finger family protein (.1.2) AT3G59960 93 / 5e-20 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT4G02020 93 / 5e-19 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146300 [exp] 1917 / 0 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.015G014300 [exp] 242 / 1e-65 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.002G170600 [exp] 240 / 3e-65 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.012G013900 [exp] 238 / 2e-64 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.014G098400 [exp] 237 / 2e-64 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.005G260100 [exp] 159 / 3e-39 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 157 / 1e-38 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.018G023000 [exp] 155 / 7e-38 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.005G171800 [exp] 119 / 5e-27 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026725 [exp] 1528 / 0 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 1505 / 0 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10012626 [exp] 218 / 4e-58 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 206 / 3e-54 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10005007 [exp] 175 / 3e-44 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10004012 [exp] 159 / 2e-40 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10019026 [exp] 153 / 2e-37 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10025172 [exp] 153 / 2e-37 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 152 / 5e-37 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10030262 [exp] 129 / 8e-30 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain CL0049 [poplar] [flax] PF00856 [poplar] [flax] SET SET domain CL0049 [poplar] [flax] PF05964 [poplar] [flax] FYRN F/Y-rich N-terminus CL0049 [poplar] [flax] PF05965 [poplar] [flax] FYRC F/Y rich C-terminus CL0390 [poplar] [flax] zf-FYVE-PHD PF13771 [poplar] [flax] zf-HC5HC2H PHD-like zinc-binding domain CL0390 [poplar] [flax] zf-FYVE-PHD PF13831 [poplar] [flax] PHD_2 PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.002G232800.4 pacid=42776716 polypeptide=Potri.002G232800.4.p locus=Potri.002G232800 ID=Potri.002G232800.4.v4.1 annot-version=v4.1 ATGGCACTTCTACACAAACCGCATACAGAAGACAAAATCCACAAATCACCTCTCGATTTCGAAGAAGAAGAAGCCGGGGGCACTTCTATACGCTACGTGT CGTTGGACCGCGTCTACACTGCCGCGTCTCTCTGTGGATCATCCAACGTCATGTCAAAGAAAGTAAAAGCCCGGAAGTTTCTTCCCAACCACCATCCACG TGTCAACAATCCTCCTTCGTTACTCTACGTTTATTCTCGCCGTCCAAAACGACCACCCCGCCCTTCGTTTCATGATTCGTTGGTTTCACGCGCCGCTGAG CCTGAGCTGGCGGTGAAGAGTGAGATTTGTGAATTTGAGGAGGAGCCGATGATTGAGTTGAACAAGGAGAAGAAGAGGAGAAGGATTGGGAGCAATGAGT TGCTGAGATTGGGTGTCGATTCTAATATTCTGCTAGGGTTTGATAGGCCTCGTTTGAGGGATTGCCGTAATAATACTAACAATAGTAATAGTAAGATTGG AAATTTTAAGAGAAAGAAGCGTGATTCTCTGGTTACGAATTCTGATAAATTTTCGGCCCTTCCAGATACTAGTAAAAGATGGGTCAGGTTGAATTTTGAT GATGTTGATCCAAAATTGATCGTTGGGTTGCCATGCAAGGTCTACTGGCCACTGGATGCTGATTGGTATTCTGGACGTGTTGTTGGGCACATTTCAGATA CCAACCGATATAATATTGAATATGAAGATGGAGATAAAGAGGATTTGATGCTTTCAAACGAGAAAGTAAAGTTCTTTATTTCTGGTGAGGAGATGGAGCG GCTGAACCTGAGTGTCTGTGTAAAAAGTACAGATGGTGATAGAAATTATTATAATGAGATGGTTGTGTTAGCTGCCAGTTTGGATGACTGCCAAGATCTT GAGCCTGGGGATATCATATGGGCCAAACTTACTGGTCATGCTATGTGGCCAGCTATTGTTGTGGATGGAGCACTTATTGGTGATCATAAAGGCATAAGCA AAAATATTGGAGGAGGATCAATATCTGTTCAATTTTTTGGTACCCATGATTTTGCAAGAATTAAACCAAAGCAGGCGATCTCGTTTCTCAAAGGACTTCT TTCTTCTTTCCACCTAAAGTGCAAGCAACCTCGTTTCACTCGAAGCTTGGAAGAAGCAAAAATGTATCTCAGTGAACAAAAGCTTTCGAGAAGAATGCTA CAGCTGCAAAATGGCATGAAAGCTGATAGCTGTGAGAGTGCGAGTAGCGATGAAGGGAGTACAGATTCAGGAGAAGATTGCATGCAAGATGGAGGGATTC AAAGGATATTGGCTAGGCTGGGTACTTCTCCATATGTAATTGGGGATTTGCAAATAATAAGCCTTGGAAAGATTGTCAAGGATTCTGAACATTTCCAGGA TAACAGATTCATCTGGCCTGAAGGGTATACTGCTTTGAGGAAGTTTACTTCAATTAAAGATCCAAATGTTCGTATGATATATAAAATGGAAGTGTTGAGA GATGCCGAGTCAAAGATTCGGCCTCTATTTAGAGTGACATTGGATAATGGAGAGGAGATTAATGGATCCACTCCAGATGCTTGCTGGGATAAAATATACA GAAAAATCAGGAAGATGCAAGATGGTAATTCTAATGGTTTTAGCGCTGAAAGTGGAGGAGAAAGAAAACTCAAATCTGGTTCTGACATGTTTGGTTTCTC TAATCCTGAAGTTATAAAACTACTAAAGGGATTATCAAAATCCATACATTCTTCCAAACTGTCTACGTGCAAGTTAACATCTGAAAGATATCAAGGCATA CCTGTTGGTTACAGACCTGTTCGTGTTGACTGGAAAGACCTTGATAAGTGCAATGTCTGCCATATGGATGAGGAATATGAAAACAATTTGTTCCTGCAGT GTGATAAATGCAGAATGATGGTCCACGCCAGATGCTATGGGGAATTAGAACCTGTTGATGGTGTGCTGTGGTTATGCAATTTATGCCGACCAGGGGCTCC TAACTCCCCACCACCATGCTGCCTTTGTCCTGTTATTGGCGGTGCTATGAAGCCTACAACTGATGGGCGCTGGGCTCATTTGGCTTGTGCCATATGGATT CCTGAAACTTGCCTATCTGATGTCAAGAGAATGGAGCCCATTGATGGGCAAAGTAGAATCAATAAGGATCGTTGGAAGCTCTTATGTAGTATCTGTGGCG TAGCTTATGGAGCTTGTATCCAATGTTCAAATAATACTTGTCGGGTAGCATATCATCCACTTTGTGCACGTGCTGCTGGTCTTTGCGTCGAGCTTGAGGA TGAGGACAGACTCTATCTCCTTTCTCTAGATGAAGATGACGCAGATCAGTGCATTCGTTTACTTTCCTTTTGCAAGAAGCATAGGCAGCCTTCTAATGAC CGTATGGTCACAGATGAACGGGTTGGTCGAATTCCTCGTCGGTGTTCTGACTACATCCCACCGTGTAATCCATCTGGCTGTGCTCGTACTGAGCCTTACA ATTATTTTGGAAGAAGGGGGCGGAAAGAACCGGAAGCCCTCGCTGCTGCATCCTTGAAGCGATTGTTTGTAGAGAATCAGCCGTACTTGGTTGGCGGTTA CTCTCAACATGAATCATCAGGATGTACAATTGCTTCCAATGGACTCATAAAGTCTGTCTTCTCTTCTAGTCTTCAAAGGCTAAAAGCCTCTCGGCTTAGT GCTCCTAGTAACATTCTCTCTATGGCTGAAAAGTATCAACACATGCGGCAGACCTTCCGCAAGAGATTAGCATTTGGCAAATCTGGAATCCATGGATTCG GCATCTTTGCAAAGCATCCACATAGGGCTGGGGACATGGTGATTGAATATACTGGTGAACTTGTCAGACCTCCAATAGCTGATAGGAGAGAGCGCTTTAT ATACAATTCATTGGTGGGTGCTGGGACTTACATGTTTAGAATTGATGATAAACGAGTCATTGATGCCACAAGGGCTGGAAGTATTGCTCATCTGATTAAT CACTCGTGTGAGCCCAATTGCTATTCGAGAGTTATAAGCGTTAATGGTGATGAGCATATAATTATATTTGCAAAGAGAGATATTAAAAGATGGGAAGAGC TCACATATGATTATAGATTTTTCTCAATTGAAGAAAAACTAGCATGCTATTGTGGCTTCCCTCGATGCCGTGGTGTGGTTAATGACACAGAAGCTGAGGA GCAAGTGGCAAAGCTCTATGCTCCACGCAGTGAATTGACAGACTGGAAAGGAGAATAA
AA sequence Show only first row Show all	>Potri.002G232800.4 pacid=42776716 polypeptide=Potri.002G232800.4.p locus=Potri.002G232800 ID=Potri.002G232800.4.v4.1 annot-version=v4.1 MALLHKPHTEDKIHKSPLDFEEEEAGGTSIRYVSLDRVYTAASLCGSSNVMSKKVKARKFLPNHHPRVNNPPSLLYVYSRRPKRPPRPSFHDSLVSRAAE PELAVKSEICEFEEEPMIELNKEKKRRRIGSNELLRLGVDSNILLGFDRPRLRDCRNNTNNSNSKIGNFKRKKRDSLVTNSDKFSALPDTSKRWVRLNFD DVDPKLIVGLPCKVYWPLDADWYSGRVVGHISDTNRYNIEYEDGDKEDLMLSNEKVKFFISGEEMERLNLSVCVKSTDGDRNYYNEMVVLAASLDDCQDL EPGDIIWAKLTGHAMWPAIVVDGALIGDHKGISKNIGGGSISVQFFGTHDFARIKPKQAISFLKGLLSSFHLKCKQPRFTRSLEEAKMYLSEQKLSRRML QLQNGMKADSCESASSDEGSTDSGEDCMQDGGIQRILARLGTSPYVIGDLQIISLGKIVKDSEHFQDNRFIWPEGYTALRKFTSIKDPNVRMIYKMEVLR DAESKIRPLFRVTLDNGEEINGSTPDACWDKIYRKIRKMQDGNSNGFSAESGGERKLKSGSDMFGFSNPEVIKLLKGLSKSIHSSKLSTCKLTSERYQGI PVGYRPVRVDWKDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVDGVLWLCNLCRPGAPNSPPPCCLCPVIGGAMKPTTDGRWAHLACAIWI PETCLSDVKRMEPIDGQSRINKDRWKLLCSICGVAYGACIQCSNNTCRVAYHPLCARAAGLCVELEDEDRLYLLSLDEDDADQCIRLLSFCKKHRQPSND RMVTDERVGRIPRRCSDYIPPCNPSGCARTEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYSQHESSGCTIASNGLIKSVFSSSLQRLKASRLS APSNILSMAEKYQHMRQTFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPPIADRRERFIYNSLVGAGTYMFRIDDKRVIDATRAGSIAHLIN HSCEPNCYSRVISVNGDEHIIIFAKRDIKRWEELTYDYRFFSIEEKLACYCGFPRCRGVVNDTEAEEQVAKLYAPRSELTDWKGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.002G232800 [exp]	0	1
AT1G20760			Calcium-binding EF hand family...		Potri.007G063200 [exp]	1.00	0.8676
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	4.58	0.8437	Pt-ABA3.1
AT4G01270			RING/U-box superfamily protein...		Potri.002G164000 [exp]	6.70	0.8342
AT3G23900			RNA recognition motif (RRM)-co...		Potri.001G319000 [exp]	7.74	0.8325
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Potri.004G094200 [exp]	8.06	0.8157
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	9.38	0.8256
AT3G50430			unknown protein		Potri.005G133500 [exp]	9.79	0.8313
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	10.39	0.8191
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220201 [exp]	12.16	0.8347
AT5G55100			SWAP (Suppressor-of-White-APri...		Potri.001G356800 [exp]	13.49	0.8137

Compare expression of checked genes

Potri.002G232800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.