Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05835 111 / 2e-32 PHD finger protein (.1) AT1G32583 60 / 5e-12 unknown protein AT4G24972 59 / 1e-11 TPD1 tapetum determinant 1 (.1) AT4G32110 38 / 0.0004 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246900 [exp] 66 / 1e-14 AT1G32583 104 / 3e-29 unknown protein Potri.008G105600 [exp] 65 / 5e-14 AT4G24972 106 / 2e-29 tapetum determinant 1 (.1) Potri.006G017600 [exp] 61 / 2e-12 AT1G32583 187 / 5e-61 unknown protein Potri.010G246300 [exp] 55 / 2e-10 AT1G32583 85 / 1e-21 unknown protein Potri.012G102900 [exp] 51 / 1e-08 AT1G32583 160 / 2e-50 unknown protein Potri.015G101000 [exp] 50 / 2e-08 AT1G32583 157 / 5e-49 unknown protein Potri.006G257600 [exp] 42 / 9e-06 AT4G32105 77 / 4e-19 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Potri.010G145501 [exp] 39 / 9e-05 AT1G32583 74 / 1e-17 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016744 [exp] 56 / 2e-10 AT4G24972 172 / 5e-55 tapetum determinant 1 (.1) Lus10022437 [exp] 57 / 3e-10 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10001911 [exp] 50 / 1e-08 AT1G32583 157 / 5e-50 unknown protein Lus10026289 [exp] 49 / 5e-08 AT4G32090 72 / 5e-17 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10042384 [exp] 48 / 8e-08 AT4G32110 81 / 1e-20 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10007569 [exp] 46 / 3e-07 AT4G32110 64 / 2e-14 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10012177 [exp] 43 / 4e-06 AT4G32090 66 / 6e-15 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G233000.1 pacid=42777317 polypeptide=Potri.002G233000.1.p locus=Potri.002G233000 ID=Potri.002G233000.1.v4.1 annot-version=v4.1 ATGAAGATGCAGAAGCAACAAGCTTTCACCTTCCTTCTCCTTACAGTATCTCTCACATTTCCCTCTCTGATCCACAGTTTGGGGGCTAAATGTGCAACCA ATGCTCCAAGTGTCCAACAGACTCAAGTGGGGAATGGTAATCCTCCAAGATTTATGGTTGAAGTGCAAAACAACTGCCCTATGTGCCCAGTTATCAACAT CCACTTGAAATGTGGAAGCTTTCCTCAAGCTCTCGTCAACCCTAGGTTGCTCAAAGTGGTAGCCCCAGATGACTGTGTCGTTAATGGAGGCTTGCCACTC TCACCCCTGCAAAGATTTTCCTTCAATTACTCCCATCAGAAGTATCTCATGCACCCATCTTCTTGGTCCTTCCAGTGCGAGTAA
AA sequence Show only first row Show all	>Potri.002G233000.1 pacid=42777317 polypeptide=Potri.002G233000.1.p locus=Potri.002G233000 ID=Potri.002G233000.1.v4.1 annot-version=v4.1 MKMQKQQAFTFLLLTVSLTFPSLIHSLGAKCATNAPSVQQTQVGNGNPPRFMVEVQNNCPMCPVINIHLKCGSFPQALVNPRLLKVVAPDDCVVNGGLPL SPLQRFSFNYSHQKYLMHPSSWSFQCE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05835			PHD finger protein (.1)		Potri.002G233000 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008404 [exp]	9.48	0.9975
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.013G051100 [exp]	9.79	0.9974
AT4G18970			GDSL-like Lipase/Acylhydrolase...		Potri.019G008904 [exp]	14.28	0.9973
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.006G206800 [exp]	14.38	0.9955	CTS2.10
AT5G03795			Exostosin family protein (.1)		Potri.006G118000 [exp]	14.69	0.9813
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G119800 [exp]	14.69	0.9955
AT5G50335			unknown protein		Potri.015G091300 [exp]	14.76	0.9808
AT4G14930			Survival protein SurE-like pho...		Potri.010G088100 [exp]	17.14	0.9843
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.014G166600 [exp]	17.17	0.9972	HCQL4
					Potri.004G009900 [exp]	17.66	0.9971

Compare expression of checked genes

Potri.002G233000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.