Plant FIBer expression Database

Potri.002G233300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32320 737 / 0 tRNAHis guanylyltransferase (.1.2.3)
AT2G31580 734 / 0 tRNAHis guanylyltransferase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041070
[exp]
607 / 0 AT2G31580 587 / 0.0 tRNAHis guanylyltransferase (.1)
Lus10022302
[exp]
168 / 2e-47 AT1G17860 176 / 4e-54 Kunitz family trypsin and protease inhibitor protein (.1)
Lus10006155
[exp]
135 / 8e-34 AT2G31580 128 / 5e-34 tRNAHis guanylyltransferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04446 Thg1 tRNAHis guanylyltransferase
PF14413 Thg1C Thg1 C terminal domain
Representative CDS sequence
>Potri.002G233300.1 pacid=42776911 polypeptide=Potri.002G233300.1.p locus=Potri.002G233300 ID=Potri.002G233300.1.v4.1 annot-version=v4.1
ATGGCAAACAGCAAATACGAGTATGTCAAGTCTTTCGAGGTTGAAGACGAGATCATGTTCCCTAATCTCATCGTTGTCCGAATTGGAGACCGCCATTTTC
AAAGATTCAGTGAAGTTCACGAATTCGAGAAGCCAAACGATGAGAAAGCTTTGAAATTGATGAGCTTATGTGCTACTTTGGTTTTACAAGAATACCCTGA
TATTGTCTTCTCTTTTGGCTTCAGTGATGAATATAGTTTTGTTTTCAAGCAGACGACTAAGTTCTACCAGAGACGAGCCAGCAAAGTGGTTTCCATCATC
GTGTCTTTCTTCACTTCCGTGTATGTCACAAAATGGAAAGAATTCTTCCCTGAGAAAGAATTGAAATACCCTCCTTCATTTCATGCCAGGCCGATTGTCT
GTGCATCCCTTGAGGTTCTACAAGAATATCTTGCGTGGAGACAACAGCATTGCCATATTACCAACCAGTATAACACTTGTCTTTGGGAGCTTGTTAAAAG
TGGCAAGACTGAAAAGGAAGCGCTTGAAATTTTGAAGGGTACTCAGAAACAAGAGCGAAATGAGCTTCTCTTTCAACATTTTGGTATCAACTACAGAACT
CTTCCTCAGATGTTTCGTCAGGGTTCTTGTGTTCTCAGGACAGAGGTAGAAGATATTGTGAAGTACAGTGAGAATGGAACTCCTATTAAAAGAATGAGGA
GGGATAAAACAACAGTCCATTCAAAGAATATTGCTGGGAGAAGTTTTTGGAATGAGCACCAAAGTCTTCTTAAAGAGCTGGGTGGTTTTACTAAGGATGT
TGGCAAAATTAACTCAGATTACATTAGGTCTTTCCTTTTTGAAAGCAAATTGATGGCATCCACTTGGATTGTCATTAGAATTGATGGATGCCATTTTCAC
AGATTTTCTGAAGTTCATGACTTTGAGAAGCCAAATGATGAGCAAGCTCTGAACCTTATGAATTCATGTGCAGTGGCTGTTCTACAAGAATTTGCAGATG
TTGTTTTTTCTTATGGTGTCAGTGATGAGTACAGCTTTGTGTTGAAGAAGGATTCTCAGTTTTGCCAAAGGAAAGCAAGCAACATCGTGTCTATTATGGT
ATCATTCTTCACTTCAATGTATGTGATGAATTGGAAAGCATTCTTCCCCCAGAAAGAGTTGAAATATTGTCCGGCTTTTGATGGAAGGGCTGTATGCTAT
CCATCAACTGAGATTCTACGAGATTACCTGGCATGGAGACAAGTTGATTGCCACATAAACAACCAGTACAATACTTGTTTCTGGATGCTTGTTAAGTCTG
GAAAAAGCAAAAGTGAAGCTCAACGTACTTTGAAGGGAACTCAAGCACAAGAGAAAAAAGAAATGCTTGCTTGGTTTGGTATTGATGACTACAATGCATT
ACCAGTCATGTTTCGGCAGGGTTCTTCTGTTTTCCGGGATGGCATGGCCCCGAATGAAAACGGAGCAGCTGGTGAAAAACCTTGTTACAAAGTAATTGTA
GAACATTGTAATATAATTGAGCAGAGCTTTTGGGAAGAACACCCAGGCATCCTTGGATAG
AA sequence
>Potri.002G233300.1 pacid=42776911 polypeptide=Potri.002G233300.1.p locus=Potri.002G233300 ID=Potri.002G233300.1.v4.1 annot-version=v4.1
MANSKYEYVKSFEVEDEIMFPNLIVVRIGDRHFQRFSEVHEFEKPNDEKALKLMSLCATLVLQEYPDIVFSFGFSDEYSFVFKQTTKFYQRRASKVVSII
VSFFTSVYVTKWKEFFPEKELKYPPSFHARPIVCASLEVLQEYLAWRQQHCHITNQYNTCLWELVKSGKTEKEALEILKGTQKQERNELLFQHFGINYRT
LPQMFRQGSCVLRTEVEDIVKYSENGTPIKRMRRDKTTVHSKNIAGRSFWNEHQSLLKELGGFTKDVGKINSDYIRSFLFESKLMASTWIVIRIDGCHFH
RFSEVHDFEKPNDEQALNLMNSCAVAVLQEFADVVFSYGVSDEYSFVLKKDSQFCQRKASNIVSIMVSFFTSMYVMNWKAFFPQKELKYCPAFDGRAVCY
PSTEILRDYLAWRQVDCHINNQYNTCFWMLVKSGKSKSEAQRTLKGTQAQEKKEMLAWFGIDDYNALPVMFRQGSSVFRDGMAPNENGAAGEKPCYKVIV
EHCNIIEQSFWEEHPGILG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G32320 tRNAHis guanylyltransferase (.... Potri.002G233300
[exp]
0 1
AT2G34560 P-loop containing nucleoside t... Potri.011G085200
[exp]
2.44 0.7274
AT3G07140 GPI transamidase component Gpi... Potri.014G190600
[exp]
12.68 0.7177
AT3G52570 alpha/beta-Hydrolases superfam... Potri.016G076550
[exp]
13.49 0.7411
AT2G31870 PARG1, TEJ Sanskrit for 'bright', poly\(A... Potri.007G145800
[exp]
14.69 0.7258 TEJ.1
AT4G00090 Transducin/WD40 repeat-like su... Potri.014G069400
[exp]
15.68 0.7189
AT2G47580 U1A spliceosomal protein U1A (.1) Potri.002G203600
[exp]
24.24 0.7008
AT2G43900 Endonuclease/exonuclease/phosp... Potri.007G145100
[exp]
35.19 0.6445
AT5G24810 ABC1 family protein (.1.2) Potri.012G082950
[exp]
43.37 0.7041
AT2G30470 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level ex... Potri.013G157500
[exp]
49.21 0.6935
AT1G78770 APC6 anaphase promoting complex 6 (... Potri.011G108800
[exp]
52.52 0.6606

Potri.002G233300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.