Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TIF3.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10840 555 / 0 TIF3H1 translation initiation factor 3 subunit H1 (.1.2) AT5G05780 44 / 7e-05 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT3G11270 44 / 0.0001 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147100 [exp] 607 / 0 AT1G10840 545 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Potri.008G065300 [exp] 44 / 8e-05 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192200 [exp] 44 / 9e-05 AT5G05780 560 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065200 [exp] 43 / 0.0002 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020427 [exp] 577 / 0 AT1G10840 570 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Lus10007054 [exp] 568 / 0 AT1G10840 558 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Lus10027775 [exp] 45 / 4e-05 AT5G05780 555 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10035522 [exp] 45 / 5e-05 AT5G05780 550 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [poplar] [flax] JAB PF01398 [poplar] [flax] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Potri.002G233500.1 pacid=42779686 polypeptide=Potri.002G233500.1.p locus=Potri.002G233500 ID=Potri.002G233500.1.v4.1 annot-version=v4.1 ATGGCTAATCTTACCCCCACAATGGCACGGTCTTTCCTTCAGGTTGCAGCCACGGAGGAGGTTGCTCTTCCTCTCCGTGTTGTTCAGATGGAAGGACTGG TTGTTTTGAAGATAATCAAACACTGCAAGGAGTTTTCGCCGTCTTTAGTGACTGGGCAGCTCCTAGGGTTGGATGTTGGTAGCGATCTTGAAATTACCAA CTGCTTTCCTTTTCCGATTAGGGAGGAGGATGAGGAGATTGAAGCAGATGGTGCTAATTACCAGCTTGAAATGATGAGGTGCTTGAGAGAGGTCAATGTT GACAATAATACTGTTGGATGGTATCAGTCAATGTTGTTCGGTTGTTTCCAAACGGTGGAATTGATTGAGACATTTATGAATTACCAGGAAAATATTAAGC GGTGTGTTTGTATAATTTATGATCCTTCAAGAGCTAATCAAGGTGCCTTAGCTCTCAAGGCTTTGAAGCTTTCTGATTCTTTCATGGATCTGTACCGCAA CAACAATTTTACTGGAGAGAAATTGAGGGAGAAAAACTTGTCATGGGTGGATATTTTTGAGGAAATTCCTATCAAAGTTTCAAATTCTGCACTTATCAGT GCCTTCATGACTGGGCTAGAAGCTGATACACCAGTGACTCAGTGTGATTATGACCGCCTGCAATTATCAACCAGTCCATATTTGGAAAGTAATGTAGAAT TTTTGATTGAATGCATGGATGATTTGTCAGTCGAGCAGCAGAAGTTCCAATATCACTATCGGAACCTTTCACGCCAGCAAGCTCAGCAGCAAGCATGGCT TCAAAAGAGAAGGTCAGAGAACATGACACGCAAAGCTGCAGGAGAAGAGCCCTTGCCTGAGGAGGATCCTTCAAACCCCATCTTCAAACCAATCCCTGAA CCATCACGTTTGGGTAGTTTCCTGATAACCAATCAAATGGCAAATTATTGCAACCAAATCAACGGGGTTTCTGGACAGAGCTTCAGCCGATTATACTTGA TGAAGGCTTTGCATAAAGATTGA
AA sequence Show only first row Show all	>Potri.002G233500.1 pacid=42779686 polypeptide=Potri.002G233500.1.p locus=Potri.002G233500 ID=Potri.002G233500.1.v4.1 annot-version=v4.1 MANLTPTMARSFLQVAATEEVALPLRVVQMEGLVVLKIIKHCKEFSPSLVTGQLLGLDVGSDLEITNCFPFPIREEDEEIEADGANYQLEMMRCLREVNV DNNTVGWYQSMLFGCFQTVELIETFMNYQENIKRCVCIIYDPSRANQGALALKALKLSDSFMDLYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALIS AFMTGLEADTPVTQCDYDRLQLSTSPYLESNVEFLIECMDDLSVEQQKFQYHYRNLSRQQAQQQAWLQKRRSENMTRKAAGEEPLPEEDPSNPIFKPIPE PSRLGSFLITNQMANYCNQINGVSGQSFSRLYLMKALHKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10840		TIF3H1	translation initiation factor ...		Potri.002G233500 [exp]	0	1	TIF3.6
AT5G57490		VDAC4, ATVDAC4	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.006G169400 [exp]	2.44	0.8501
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.001G024500 [exp]	3.74	0.8266	Pt-IMP4.1
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.017G065800 [exp]	4.79	0.8592	PHB3.1
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Potri.010G192000 [exp]	4.89	0.8510	Pt-TIF3.4
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.017G060800 [exp]	10.67	0.7547
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G100800 [exp]	22.80	0.8302
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Potri.001G038000 [exp]	24.45	0.7490	RAD23.1
AT1G47278			unknown protein		Potri.009G029400 [exp]	24.49	0.7543
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	24.85	0.8268
AT1G28395			unknown protein		Potri.011G057300 [exp]	25.09	0.7958

Compare expression of checked genes

Potri.002G233500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.