Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28040 1117 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 675 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 629 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G12460 466 / 4e-149 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 421 / 3e-132 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65700 392 / 5e-120 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G24240 391 / 1e-118 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 390 / 4e-118 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 384 / 4e-117 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 377 / 2e-114 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147300 [exp] 1595 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 732 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 711 / 0 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 691 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 668 / 0 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G117500 [exp] 459 / 1e-146 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G114500 [exp] 456 / 4e-145 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 380 / 1e-115 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.003G107600 [exp] 380 / 2e-115 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037276 [exp] 974 / 0 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10035687 [exp] 965 / 0 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10022738 [exp] 684 / 0 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10014174 [exp] 681 / 0 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030526 [exp] 673 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 662 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 564 / 0 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 553 / 0 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006675 [exp] 457 / 6e-146 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10000814 [exp] 400 / 8e-123 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G233600.1 pacid=42778806 polypeptide=Potri.002G233600.1.p locus=Potri.002G233600 ID=Potri.002G233600.1.v4.1 annot-version=v4.1 ATGGCTACCCCACTAGTGATGGGTTATTCTCATTTGTTGTTATATTTGCTAGTTTCTATAGTTGTTTCTCTTGAAGGTTGCATGGGAAGTGATAGTGTAC CGATACAAATCAATGATGATGTCTTCGGCTTGATTGTTTTCAAGGCAGACCTTATCGACCCATCTTCCTATCTCAGCTCATGGAACGAAGACGATGACTC ACCATGTTCATGGAAGTTCATAGAATGCAATCCGGTGAGCGGCAGAGTCTCTCAAGTCTCACTCGATGGCTTGGGATTATCAGGTAGATTAGGTAAAGGG CTCCAAAAGTTGCAGCATTTGAAGACATTATCATTGTCTCAAAACAATTTTAGCGGTGGCATTAGTCTTGAGCTTGGTTTCTTGTCAAATCTTGAAAGGC TTAACCTTAGCCACAACAGTCTTTCAGGCCTCATCCCATCTTTTCTTGACAATATGAGTTCCATTAAGTTTCTTGATCTCTCTGAGAATTCATTCTCCGG ACCACTCCCAGATAATCTTTTTCGAAACTCTCATTCTCTTCGTTACCTTTCTTTAGCTGGGAATTTACTTCAAGGGCCAATTCCAAGTTCACTATTGAGC TGCTCTTCCTTGAACACTATTAATCTGTCCAACAACCATTTCTCCGGTGACCCAGATTTTAGTAGTGGGATTTGGTCATTGAAGCGGCTTCGAAAATTGG ATCTTTCACACAATGAGTTTTCGGGGTCCGTGCCACAAGGGGTATCAGCCATTCACTTTTTGAAAGAGCTCCAATTACAGGGAAATCGCTTTTCCGGACC ACTACCTGGAGATATTGGACTGTGCCCGCACTTGAATAGATTGGATTTAAGCCGCAATCTTTTTAGCGGAGCACTGCCAGAATCTCTTCAGAGGCTGAGT TCAATGAGCCTTTTCAGTTTATCCAAGAATATGTTGGCAGGTGAGTTCCCTCGGTGGATTGGTAGCTTGACCAATCTTGAATACTTGGACTTGTCAAGCA ATGCTCTAACTGGAAGCATCCCATCATCCATTGGTGACTTGAAGTCTCTGCGCTACTTGAGTTTGTCCAATAACAAACTCTTTGGCATCATTCCCACTTC AATGGTTTCTTGCACGATGTTATCAGTGATTCGGTTGAGAGGTAACAGCTTCAATGGCAGCATACCAGAAGGCTTGTTTGATCTTAGGCTGGAGGAATTA GATTTTTCAGACAATGGATTGGTAGGTTCAATTCCATCAGGTTCGATTACTTTCTTTTCATCTCTTCATACGCTTGATCTTTCAAAGAACAATCTCACAG GACATATTCCAGCTGAAAGGGGTCTCTCATCTAATTTAAGATACTTGAATTTGTCCTGGAACAATCTGGAATCAAGAATGCCACTAGAGCTTGGCTACTT TCAGAACTTGACAGTGTTGGATCTTCGAAACAGTGCTTTAGTTGGCTTAATTCCCGCTGATATATGTGAGTCTGGAAGTTTGAACATCCTTCAATTGGAC GGAAACTCATTGGTGGGCCAAATTCCAGAAGAGATTGGAAATTGTTCATCACTGTATTTGCTGAGCTTGTCCCAAAATAATTTGAGCGGTTCCATTCCCG AGTCCATTTCAAGGCTAAACAAGCTCAAGATTCTGAAGTTGGAATTCAATGAGCTGACCGGAGAGATACCGCAAGAGCTTGGAAAACTGGAGAATCTTCT GGCTGTAAATGTATCTTATAATAAGCTAGTGGGCAGGCTTCCTGTTGGGGGTATATTTCCAAGTTTGGATCGAAGTGCATTGCAGGGGAATTTGGGACTT TGCTCACCGTTGTTGAAGGGGCCATGTAAGATGAATGTTCCCAAGCCTCTAGTACTTGATCCGTATGCCTATGGCAATCAAGGGGATGGTAAGAAACCAA GAAACGTGTCCTCTCACCCCGCAAGGTTCCATCATCATATGTTCCTCAGTGTTTCAACTATCATTGCAATTTCAGCAGCTATATTCATTTTGTTTGGAGT GATACTCGTAAGTCTACTAAATGTATCTGTCCGGAAGAGGCTTGCATTTGTGGACCATGCCTTGGAAAGCATGTGCTCGAGCTCTTCCAGGTCCGGAAAT CTATCCACAGGCAAGCTGGTCCTGTTCGATTCGAAATCATCTCCTGATTGGATCAGCAATCCAGAAGCACTCCTTAATAAGGCTGCTGAGATAGGTCACG GAGTATTTGGAACTGTTTACAAGGTCTCATTGGGTTCAGAGGCAAGAATGGTAGCAATAAAGAAGCTCTTGACATTAAACATTATCCAATATCCTGAAGA TTTTGATCGAGAAGTTCAGGTATTAGGAAAGGCAAGGCACCCAAATCTCTTATCATTAAAAGGGTATTACTGGACTCCTCAATTGCAGCTGTTGGTATCA GAATATGCACCTAATGGCAGTTTGCAAGCCAAACTCCATGAAAGGATACCGTCTGCTCCACGTCTTTCTTGGGCAAACAGATTGAAGATTGTGCTTGGAA CAGCAAAGGGACTTGCACACTTGCATCATTCTTTCCGTCCACCAATCATTCACTGTGACATAAAACCAAGCAACATTCTTCTTGATGAAAATTTCAACCC AAAGATTTCGGATTTTGGACTTGCAAGGTTCTTGGCGAAGCTTGATAGGCATGTTATAAGTACTAGATTTCAGAGTGCATTAGGATATGTGGCACCAGAA CTATCATGCCAGAGCTTGAGAATCAATGAGAAATGTGATATATATGGTTTTGGAATCTTGATTCTTGAGCTAGTAACTGGAAGAAGGCCAGTGGAATATG GTGAAGACAATGTGCTGATACTTAAGGATCATGTGAGGTTTTTGCTTGAACAAGGTAATGTCTTTGATTGTGTTGATCCAAGCATGGGGGATTATCCTGA GGATGAGGTTCTTCCGGTGCTCAAATTGGCCCTTGTATGCACCTCTCACATACCTTCCAGCAGGCCTTCCATGGCAGAAGTGGTGCAAATATTGCAGGTC ATCAAGACCCCAGTTCCACAAAGAACAGAATTTTTCTAA
AA sequence Show only first row Show all	>Potri.002G233600.1 pacid=42778806 polypeptide=Potri.002G233600.1.p locus=Potri.002G233600 ID=Potri.002G233600.1.v4.1 annot-version=v4.1 MATPLVMGYSHLLLYLLVSIVVSLEGCMGSDSVPIQINDDVFGLIVFKADLIDPSSYLSSWNEDDDSPCSWKFIECNPVSGRVSQVSLDGLGLSGRLGKG LQKLQHLKTLSLSQNNFSGGISLELGFLSNLERLNLSHNSLSGLIPSFLDNMSSIKFLDLSENSFSGPLPDNLFRNSHSLRYLSLAGNLLQGPIPSSLLS CSSLNTINLSNNHFSGDPDFSSGIWSLKRLRKLDLSHNEFSGSVPQGVSAIHFLKELQLQGNRFSGPLPGDIGLCPHLNRLDLSRNLFSGALPESLQRLS SMSLFSLSKNMLAGEFPRWIGSLTNLEYLDLSSNALTGSIPSSIGDLKSLRYLSLSNNKLFGIIPTSMVSCTMLSVIRLRGNSFNGSIPEGLFDLRLEEL DFSDNGLVGSIPSGSITFFSSLHTLDLSKNNLTGHIPAERGLSSNLRYLNLSWNNLESRMPLELGYFQNLTVLDLRNSALVGLIPADICESGSLNILQLD GNSLVGQIPEEIGNCSSLYLLSLSQNNLSGSIPESISRLNKLKILKLEFNELTGEIPQELGKLENLLAVNVSYNKLVGRLPVGGIFPSLDRSALQGNLGL CSPLLKGPCKMNVPKPLVLDPYAYGNQGDGKKPRNVSSHPARFHHHMFLSVSTIIAISAAIFILFGVILVSLLNVSVRKRLAFVDHALESMCSSSSRSGN LSTGKLVLFDSKSSPDWISNPEALLNKAAEIGHGVFGTVYKVSLGSEARMVAIKKLLTLNIIQYPEDFDREVQVLGKARHPNLLSLKGYYWTPQLQLLVS EYAPNGSLQAKLHERIPSAPRLSWANRLKIVLGTAKGLAHLHHSFRPPIIHCDIKPSNILLDENFNPKISDFGLARFLAKLDRHVISTRFQSALGYVAPE LSCQSLRINEKCDIYGFGILILELVTGRRPVEYGEDNVLILKDHVRFLLEQGNVFDCVDPSMGDYPEDEVLPVLKLALVCTSHIPSSRPSMAEVVQILQV IKTPVPQRTEFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28040			Leucine-rich receptor-like pro...		Potri.002G233600 [exp]	0	1
AT1G25510			Eukaryotic aspartyl protease f...		Potri.010G128200 [exp]	2.82	0.8291
AT4G20940			Leucine-rich receptor-like pro...		Potri.011G163700 [exp]	3.87	0.8311
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	4.69	0.8685
AT3G44610			Protein kinase superfamily pro...		Potri.004G186200 [exp]	6.32	0.8504
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.001G326200 [exp]	12.00	0.8065
AT1G14890			Plant invertase/pectin methyle...		Potri.008G132600 [exp]	12.24	0.7848
AT3G56640		SEC15A	exocyst complex component sec1...		Potri.006G034200 [exp]	14.35	0.7292
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.015G133800 [exp]	15.55	0.7938
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.005G174000 [exp]	16.88	0.7809	PtrAUX7
AT1G29980			Protein of unknown function, D...		Potri.011G087500 [exp]	18.13	0.7971

Compare expression of checked genes

Potri.002G233600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.