Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13340 597 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G55680 588 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56190 582 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G78070 484 / 1e-169 Transducin/WD40 repeat-like superfamily protein (.1) AT1G36070 458 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 55 / 3e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 50 / 3e-06 MAC3B MOS4-associated complex 3B (.1.2.3) AT5G23430 49 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G34460 48 / 6e-06 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT5G25150 48 / 1e-05 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147400 [exp] 792 / 0 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G168600 [exp] 615 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G000500 [exp] 612 / 0 AT3G13340 683 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G471800 [exp] 603 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G168600 [exp] 508 / 2e-179 AT1G78070 649 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G094100 [exp] 508 / 5e-179 AT1G78070 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G000800 [exp] 175 / 3e-53 AT5G56190 201 / 8e-64 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147500 [exp] 174 / 9e-53 AT3G13340 124 / 2e-34 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G009500 [exp] 56 / 1e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021975 [exp] 726 / 0 AT5G56190 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041268 [exp] 717 / 0 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10037252 [exp] 599 / 0 AT1G55680 685 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035667 [exp] 598 / 0 AT1G55680 684 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041102 [exp] 490 / 6e-172 AT1G78070 622 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036428 [exp] 468 / 9e-163 AT1G78070 598 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 56 / 2e-08 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 54 / 2e-07 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10003487 [exp] 53 / 2e-07 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 53 / 3e-07 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G233700.3 pacid=42779149 polypeptide=Potri.002G233700.3.p locus=Potri.002G233700 ID=Potri.002G233700.3.v4.1 annot-version=v4.1 ATGTCATACTACCAGCGGTTAGAAGAAATGAATTACATGGCGGAAGAGGCAGAAATGGTTGATTTCGTTGACGAAATGGATGGAGGAGCAGCCGCCGCCG CCGCTGGTGGTGTAGAAGATGTGGACGCGGATGAATACGAGTTGATTACCAAGGTTACGGATACATCATCTGGGCAAGCCAGAAACGGGCAGGACATACA GGGTATTCCCTGGGAAAGATTGAATATAAGCAGGGAAAATTACAGATCTACGAGGCTTGACCAGTACAAGAATTATGAGAACATCCCCTTATCCGGCGAA GCTGTCGATAAGGAGTGCAAACAAATGGAGAAGGGTGGCCATTACTATGAGTTCTTTTATAATACTAGATCGGTTAAGCCCACCATTCTTCATTTTCAGC TCAGGAACTTGGTCTGGGCTACTTCAAAGCACGATGTATATCTTATGTCTAATTATTCAGTCATGCACTGGTCATCCATATCTGGCAATTTGTCTGAGGT CATTGATTTTGCAGGACATGTAGCCCCTTCTGAGAAACATGCTGGAAGTTTGTTAGAAGGTTTCACCCAAACTCAAATCAGCACCATAGCAGTCAAAGAT AATTTTCTTGTTGCTGGGGGCTTCCATGGAGAGCTTACTTGCAAACGTTTGGATAAACAAGGAGTTAGCTTTTGTACCCGCACTACATATGATGACAATG CCATCACGAATGCTATTGAGATATATGACAGCATGAGGGGTGGAATCCGTTTCATGTCATCCAACAATGATGGTGGTCTTAGAGAATATGACTTGGAGAC ATTTCAACTTTTGAATCACTTTCGTTTCCCTTGGCCAGTGAATCACACATCAGTGAGTCCTGACCGGAGGCTAATAGCAGTTGTCGGAGATAACTTGGAT GGATTGTTGGTGGATTCACAAAGTGGGAAGACTGTATCCACTGTGGAAGGTCACCTAGATTATTCTTTTGCATCAGCGTGGCACCCAGATGGAAATGTTT TTGCCACAGGGAACCAGGATAAGACCTGCCGAGTGTGGGATATAAGAAAGCTGTCGTCGCCTACTGCTATCCTCAAGGGAAACTTGGGTGCGGTTCGTTC AATTTGCTTTTCATCAGATGGCCAATTCATGTATGTAGCCGAACCTGCAGATTTTGTGCATGTTTATAGTACACAGGATGACTACAGGAGACGGCAAGAG ATTGATTTCTTTGGTGAGATTTCAGGAGTAGCTCTTAGCCCAGACGATGAATCTTTGTATATAGGAATCTGGGACCGTACTTATGCGAGCTTGCTACAGT ATAACAAAAGGCATACATATGGATATCTCGATTCCTACTTGTAA
AA sequence Show only first row Show all	>Potri.002G233700.3 pacid=42779149 polypeptide=Potri.002G233700.3.p locus=Potri.002G233700 ID=Potri.002G233700.3.v4.1 annot-version=v4.1 MSYYQRLEEMNYMAEEAEMVDFVDEMDGGAAAAAAGGVEDVDADEYELITKVTDTSSGQARNGQDIQGIPWERLNISRENYRSTRLDQYKNYENIPLSGE AVDKECKQMEKGGHYYEFFYNTRSVKPTILHFQLRNLVWATSKHDVYLMSNYSVMHWSSISGNLSEVIDFAGHVAPSEKHAGSLLEGFTQTQISTIAVKD NFLVAGGFHGELTCKRLDKQGVSFCTRTTYDDNAITNAIEIYDSMRGGIRFMSSNNDGGLREYDLETFQLLNHFRFPWPVNHTSVSPDRRLIAVVGDNLD GLLVDSQSGKTVSTVEGHLDYSFASAWHPDGNVFATGNQDKTCRVWDIRKLSSPTAILKGNLGAVRSICFSSDGQFMYVAEPADFVHVYSTQDDYRRRQE IDFFGEISGVALSPDDESLYIGIWDRTYASLLQYNKRHTYGYLDSYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13340			Transducin/WD40 repeat-like su...		Potri.002G233700 [exp]	0	1
AT1G28540			unknown protein		Potri.004G051300 [exp]	4.24	0.6481
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.016G047600 [exp]	7.81	0.7141
AT5G23590			DNAJ heat shock N-terminal dom...		Potri.009G138100 [exp]	19.79	0.6732
AT4G32600			RING/U-box superfamily protein...		Potri.006G247000 [exp]	20.27	0.6954
AT5G50970			transducin family protein / WD...		Potri.012G108100 [exp]	49.71	0.6412
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.003G043500 [exp]	75.71	0.6436
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.016G059700 [exp]	113.36	0.5909
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.018G068200 [exp]	154.34	0.5702	NFC906,ATMSI4.3
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Potri.002G248700 [exp]	156.34	0.6051
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Potri.009G018900 [exp]	248.23	0.5766

Compare expression of checked genes

Potri.002G233700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.