Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48360 965 / 0 zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041269 [exp] 1073 / 0 AT1G48360 864 / 0.0 zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides (.1.2.3) Lus10037442 [exp] 111 / 3e-28 AT1G48360 99 / 7e-25 zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [poplar] [flax] PDDEXK PF08774 [poplar] [flax] VRR_NUC VRR-NUC domain CL0236 [poplar] [flax] PF08797 [poplar] [flax] HIRAN HIRAN domain
Representative CDS sequence Show only first row Show all	>Potri.002G233800.2 pacid=42777531 polypeptide=Potri.002G233800.2.p locus=Potri.002G233800 ID=Potri.002G233800.2.v4.1 annot-version=v4.1 ATGTTGAGGGGAAGGGAGAGCTTGATCCGATTGGTTGGTAAGCGCCGAAGATTCCTCCCCAATCGTAAATCTCTTCTTTCCGATTCCACTTCCATTATCT CTCACTCTCACCCTCCTCAGACGCCTTTGAATTTGGGAAAAACGGATGAAAATGAAGATGGAATAATAATGTCAATGGAGAGTGAACAGAAATCCAAATC ACCGCAGTCTTCAGATTCGGTAACTTGCCCTGTTTGTTCCTCTAAACTTGCTGCTCAAGACCACATCATCAACTCTCATTTAGATGCATGCCTAACTAGA GGAACCAAACGGAAATTGACGCAGCGCACCCTCTTCCAACTCAACTTCTGCTCACAACCAATGGTGTGTAGTAGGTCTAGTGATGTAAAGAAGTTGGGAA CAGGAAATGTACAGGAGGATGCGGCAGTTGGTTTTGACAACTCTACTGCAGTTGATGAAAATGAAGGTAATTTAGGCACATTGGTTCCAATGGGGGAGGC TGTTTTAGGAACTAGCATGGATGGTTCACCTATGAAACAAAAACTGATTGATGATGATGGGATCAACAGCCGAGTTGATTCCTCTTTGTTGAATTTGAGA AGTGAGTTCACGAAATGTATTGAGGCAGTAACTGTGGATGACATATCAGGGGAGACTGCTTTAGGAACTAGTGCTGGTGGTTCGACTATGAAGCAAAAAC TGATTGATGATGATCGGATCAATGGCCAAGTTGATCCCTCTTTGTTGAATTTGAGAAGTGAGGTCATGAAATCTATTGAGGCTGTACCTGTGGGTGACAT ATCAGGGGTGTTTCTTGAAACCTTCATTGTTGGACGTAGATTTAGTGTTGAAAAGGAATTAAATCTTGGTGCAAACATCTGTCTTTTGAGAGAGACAGAT AATGCTAAAGATCCCAATGCTATCCAGGTTCTTTTGGCAGATTCCAGATGCTGTAAAGTGCTGGGTTATCTCCCCCGAGAATTAGCTCAATATTTGTCTC CTCTAATTGATAAGTACTCACTGACCTTTAAGGGATGCATAACATCTGTTCCAAAACATTATCTTGATGTTGTTCCCATTCAAATCGAATGTTGCGAAGT TATGTTACAAAACAATAAAGACCATACTGAAATTGAGGACTTCACATGTTCATGGAAAAATGTTCTTCATGTGGCTGAATCTGCCAAGAATTATCCGCCT AGTATGACGAAATATCAACAAAACTTTTGGGTGTTGATACAAGAGGTTTTAAAAAGTAATCCCCATCTTTTCACCAATGATGAAAAAATGTTTTTAGAAT CATTTATTTCTCTATCAGATGACAGTCAGAGGCTTTTTGTTCGGCTCTATACACGTAAAGGACCATGGTTTCGGATGTCCAATATTTCATACCCAGAAGT TACTGATTCTCAGCAGGCTGTCAAGGATCTTTCTGCAATGGGTTATATGTGCTCCTTTAAAGGAGTGGATGAACTACAAGAGAATGACATGGAAAAGATT TTGAATTTACTCACCGTGTCTGAGCTACGTGAAATTGCATCCATGTCCAAGAATGGTACTCGTGTTACAAGAAAACAGGATCTTATTGCATCTGTTTTTT CATCCTATGAAGATGGAGTATGCCCATTCCTACCAATCGCTATTTTGGATAGAACAGGAATTTGTATTAAGATATCTTCAAAAGCTGAGTCCCTTATCTG GCGCACTGAGAGACTTTTCTTCCTGAATGGAGAGCAGGATCTTTCAGCATTCCTACTTGTTGATTTGGGCATCATCAAGTATCCAGCATACCACTGCATA ATATCGGAACAAATTTTCTCAGCTCGAAGTGACCTTATAGCTTATGAAGAGGCAATTGAAGTGGCACAAATGATGGATGAATCTCTTGATGAAAACAAAA GTGAATCAGTACTTAGATGCATAAAGATAGCTGAGTCTCGTATGTCTCATACTAAAGCAAGTCACTCAACAGCCTCTGAATTAGTGACTGCTTTTTTCTC ATGCTTTTCAGCATCCTGGGTATACTCTAAAGTGGTCTTTCTAGGAGTTTCTTTTCTTGAGCGCGAGCGGAGGTACAAGGATGCAATTAATTTGTTGAAG AGGTTGCTTTTTAATTTCACTTGTGATGGAAGAAGGGGGAACTGGACACTGAGATTGTCTATTGATTTGGAGCACATGGGCTGTCCCAATGAGAGCCTTT TAGTTGCTGAAGATGGGTTACTGGATCCAGGGGTACGTGCTGGTTCAAGAATTGCATTGCAAAGGCGTGTTCTTCGCCTGGGAAAACCACCAAGGCGCTG GAAAGCTCCTAGTTTCTCATCGTTTATCAAGAGGAAGATCAGAGAGGTTCATATTCAAGGAAGACCTTTGAACTGTGAAGCTGGAATAAAGAGCAGATTC TATGGAGAAGATGGGGCACAATGTGGAGTTGAGCAGCTTGCTTTACAGTATTATGCTGGTGAAGGCGGTGGATGGCAGGGTGTTCATACAGAGAGTGGAA TTTGGTTAACAATTTTTGCACTTCTTATGTGGGACATTATATTTTCTGATTTACCAAGTGTCTTCCGCAACAGATTTCAGACTGCTCCCTTGGATTTAGA GACTGATAACTTCTATCCAGCAAGAAAGAGCCTTATAGAATCCCAGTTGCAGAAAATTTATGATGGCACGGCAGAGATGATCCTCATCACATCATGGGAA TTGCATTCAGGAACAGCTTGTAGGGGTGTTAATTGGGACCGGCATTCTCTCCCGGAACTTCGAGCCGCTGTTACCTGCGTTGGAGGCCCTTGTTTGGCCT CTCTCTGCCGACACCTTGCTCAAGATTATCGGAGCTGGTCCAGTGGAATGCCAGATTTGTTGCTGTGGCGCTTCCATGGAGAGTACAAAGGTGAAGCCAA GCTTGTCGAAGTTAAAGGCCCCAGGGATTGCCTCTCTGAGCAGCAACGAGCATGGTTGCTGCTACTAATGGATTGTGGGTTCAACACTGAAGTATGTAAA GTAAGCATTATGCCATTATCCACGTGA
AA sequence Show only first row Show all	>Potri.002G233800.2 pacid=42777531 polypeptide=Potri.002G233800.2.p locus=Potri.002G233800 ID=Potri.002G233800.2.v4.1 annot-version=v4.1 MLRGRESLIRLVGKRRRFLPNRKSLLSDSTSIISHSHPPQTPLNLGKTDENEDGIIMSMESEQKSKSPQSSDSVTCPVCSSKLAAQDHIINSHLDACLTR GTKRKLTQRTLFQLNFCSQPMVCSRSSDVKKLGTGNVQEDAAVGFDNSTAVDENEGNLGTLVPMGEAVLGTSMDGSPMKQKLIDDDGINSRVDSSLLNLR SEFTKCIEAVTVDDISGETALGTSAGGSTMKQKLIDDDRINGQVDPSLLNLRSEVMKSIEAVPVGDISGVFLETFIVGRRFSVEKELNLGANICLLRETD NAKDPNAIQVLLADSRCCKVLGYLPRELAQYLSPLIDKYSLTFKGCITSVPKHYLDVVPIQIECCEVMLQNNKDHTEIEDFTCSWKNVLHVAESAKNYPP SMTKYQQNFWVLIQEVLKSNPHLFTNDEKMFLESFISLSDDSQRLFVRLYTRKGPWFRMSNISYPEVTDSQQAVKDLSAMGYMCSFKGVDELQENDMEKI LNLLTVSELREIASMSKNGTRVTRKQDLIASVFSSYEDGVCPFLPIAILDRTGICIKISSKAESLIWRTERLFFLNGEQDLSAFLLVDLGIIKYPAYHCI ISEQIFSARSDLIAYEEAIEVAQMMDESLDENKSESVLRCIKIAESRMSHTKASHSTASELVTAFFSCFSASWVYSKVVFLGVSFLERERRYKDAINLLK RLLFNFTCDGRRGNWTLRLSIDLEHMGCPNESLLVAEDGLLDPGVRAGSRIALQRRVLRLGKPPRRWKAPSFSSFIKRKIREVHIQGRPLNCEAGIKSRF YGEDGAQCGVEQLALQYYAGEGGGWQGVHTESGIWLTIFALLMWDIIFSDLPSVFRNRFQTAPLDLETDNFYPARKSLIESQLQKIYDGTAEMILITSWE LHSGTACRGVNWDRHSLPELRAAVTCVGGPCLASLCRHLAQDYRSWSSGMPDLLLWRFHGEYKGEAKLVEVKGPRDCLSEQQRAWLLLLMDCGFNTEVCK VSIMPLST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48360			zinc ion binding;nucleic acid ...		Potri.002G233800 [exp]	0	1
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.006G132300 [exp]	2.64	0.7969
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.001G205500 [exp]	7.34	0.7583	KUP7.1
AT5G58160			actin binding (.1)		Potri.006G185501 [exp]	8.48	0.7644
					Potri.007G020732 [exp]	12.80	0.7696
					Potri.010G076150 [exp]	21.21	0.7418
AT5G64150			RNA methyltransferase family p...		Potri.018G000850 [exp]	23.68	0.6997
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.011G102500 [exp]	24.08	0.7399	Pt-TDY1.1
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.005G214400 [exp]	29.66	0.7177
AT1G77600			ARM repeat superfamily protein...		Potri.002G084300 [exp]	30.00	0.6957
AT2G37160			Transducin/WD40 repeat-like su...		Potri.006G129100 [exp]	31.74	0.7178

Compare expression of checked genes

Potri.002G233800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.