Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62990 497 / 2e-173 EMB1692 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 227 / 3e-68 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 125 / 2e-31 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 125 / 2e-31 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G08940 120 / 1e-29 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 116 / 2e-28 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 113 / 5e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 110 / 3e-26 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 108 / 2e-25 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT2G31290 105 / 2e-24 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096800 [exp] 232 / 3e-70 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 228 / 3e-68 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 132 / 7e-34 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G097900 [exp] 130 / 2e-33 AT4G08940 492 / 2e-174 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 120 / 1e-28 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 118 / 1e-28 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 112 / 4e-27 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 113 / 5e-27 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.006G195900 [exp] 109 / 7e-26 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010567 [exp] 542 / 0 AT5G62990 509 / 2e-178 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 236 / 2e-71 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 234 / 5e-71 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10006104 [exp] 201 / 3e-61 AT5G62990 197 / 3e-60 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10008711 [exp] 130 / 3e-33 AT4G08940 538 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 119 / 5e-29 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 119 / 2e-28 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 117 / 6e-28 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10011327 [exp] 115 / 9e-28 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 113 / 3e-27 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [poplar] [flax] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Potri.002G233900.1 pacid=42776759 polypeptide=Potri.002G233900.1.p locus=Potri.002G233900 ID=Potri.002G233900.1.v4.1 annot-version=v4.1 ATGGCTTTGTACCTGTCTTCCCCTTCCCAAACCGGTTGTTTCCTCAAGTACACCTTCCTCCCATCGAGTACTCCTTCTGAGCTACATGCAAATCCCTCCC TGACTTGTAGAAAACCCAGATACAAGCGTCTTTCCATATCTTGTTCAGCTCCAAAAATTGTTCGTGATGTTTCACTAGACAAGCACGTTGTGAGACAAAG TAGGATTCGGTTTGTTCAAAAGCTTAAAACGCTGCTGTTGTCCAAACCAAAACATTACATTCCGCTCCACATTCTTTCCAAATGCCGTTCCTATCTTTCA CTCACGAAACCTTGTTCAATCCGCTCTATGATTTATCGTTACCCTTCCATTTTTGAAATATTTCCAATGCCGACACCTCCGTTGCCATTAAATGCCACCA AGCCTTACTATCAGCTGTGTGTTCGTCTGACCCCAGCTGCTGCAGCCCTTGCTGCACAGGAACTTCGTCTTCAGTCTGAAATTTCCACTGATTTAGCCAA CAAACTGCAGAAGCTTCTCATGCTCTCTTCTCATCGCCGACTTGTCTTGTCGAAGCTGGTTCATCTTGCACCTGATCTCGGGCTTCCCGCTAATTTTCGA TCTCGCCTCTGCAATGACCACCCTGATAAATTCAGGACTGTTGACACCTCGTACGGTCGTGCACTTGAGCTTGTATCGTGGGATGAACAGCTGGCTATTC CTTTGCCCGCTCCGAAAGTTTCTCGTGAGTTGATAGTGGACAGGCCTTTGAAATTCAAGCAGTTGACACTTCGAAAGGGTCTTAATTTGAAGAGACGTCA CCGAGATTTCCTGGTCAAGTTGGGAGACTTGCCTGATGTGTGTCCATATAACACATGTTTAGAAGAATTTGCTAAGGAGTCCGTTGCGGCTGAGAAGAGA GCTTGTGCGGTTGTAAGAGAGGTGTTGGCCATGACAGTTGAAAAGAGGACTTTAATAGACCACTTGACACATTTCAGGAAGGAATTTGGGCTGTCCAACA AGTTGAGAGGGATGATTATAAGACACCCAGAGTTATTTTATGTGAGCTTGAAGGGCCTAAGGGATTCTGTTTTCTTGGTCGAGGGATTTGATGAGAATGG TAAACTTCTGGAAAATGATCGAACTTCAGTCATAAAAGATCAGTTGATGAAGTTGGTCAGTGAAGCAAAGAGGTTGAGACGAGAAAGGAGAAAGCGTGGT AAGTATGGCAATGATACTGGAGACTCCAATGATGTTGATGAGAATGATGAATTGCTCGACGCTTTTGATGACTATGATGATGGTTTCGAGAATGTGTTTG ACTCTGAAGATTCAGGCTTTGATTATGAATTTATTGACAAAGATGACGAATACAATGAGTTTGATGGTTATGGGGAGAATGGAGAGTTATGGACTGCTGA TACTTCCTTTGATGGCACCAGTGATGGGGGAGGCTCCAGGGAACCTTGGTAG
AA sequence Show only first row Show all	>Potri.002G233900.1 pacid=42776759 polypeptide=Potri.002G233900.1.p locus=Potri.002G233900 ID=Potri.002G233900.1.v4.1 annot-version=v4.1 MALYLSSPSQTGCFLKYTFLPSSTPSELHANPSLTCRKPRYKRLSISCSAPKIVRDVSLDKHVVRQSRIRFVQKLKTLLLSKPKHYIPLHILSKCRSYLS LTKPCSIRSMIYRYPSIFEIFPMPTPPLPLNATKPYYQLCVRLTPAAAALAAQELRLQSEISTDLANKLQKLLMLSSHRRLVLSKLVHLAPDLGLPANFR SRLCNDHPDKFRTVDTSYGRALELVSWDEQLAIPLPAPKVSRELIVDRPLKFKQLTLRKGLNLKRRHRDFLVKLGDLPDVCPYNTCLEEFAKESVAAEKR ACAVVREVLAMTVEKRTLIDHLTHFRKEFGLSNKLRGMIIRHPELFYVSLKGLRDSVFLVEGFDENGKLLENDRTSVIKDQLMKLVSEAKRLRRERRKRG KYGNDTGDSNDVDENDELLDAFDDYDDGFENVFDSEDSGFDYEFIDKDDEYNEFDGYGENGELWTADTSFDGTSDGGGSREPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	0	1
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.005G170300 [exp]	1.41	0.9872
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	1.41	0.9856
AT1G36320			unknown protein		Potri.002G091000 [exp]	1.73	0.9838
AT2G35490			Plastid-lipid associated prote...		Potri.003G095900 [exp]	2.82	0.9753
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	3.46	0.9817
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	3.87	0.9801
AT1G21600		PTAC6	plastid transcriptionally acti...		Potri.002G078900 [exp]	4.47	0.9656
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	4.89	0.9793
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Potri.002G250200 [exp]	6.48	0.9760
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	6.63	0.9727

Compare expression of checked genes

Potri.002G233900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.