Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19800 506 / 0 ABCI14, TGD1 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002636 [exp] 484 / 1e-172 AT1G19800 473 / 3e-168 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10020258 [exp] 462 / 1e-158 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02405 [poplar] [flax] MlaE Permease MlaE
Representative CDS sequence Show only first row Show all	>Potri.002G234400.1 pacid=42777046 polypeptide=Potri.002G234400.1.p locus=Potri.002G234400 ID=Potri.002G234400.1.v4.1 annot-version=v4.1 ATGCAAACAACTTCACAGCTTCACTCAATCTTTTACTACTCCAACAGAAGAAGCTACCTAAAACCTAATGGGTGGATAAAGACGAAATCGTTGAATTTCA GTCAACTTGGTTTCAGTAGACACTGTCAGATGTATAAATTTACATCACCTGTTCAACAAACCAAACTTTTTGTGCTGCCCAACATGGATGATGGCAATCC GTCTGTACCTATGTCTATTTTGGAAGAGGACACAAATACTAACCATGCACCCAGTTCCGGAGGAGAGAAATTCTTGAGCAAATGGTCTCCTCCTAGGTAC CTTTGGAGGGGATTATCTGTTCTTGTCTTGGCAGGTCAGGTAATTATCAGGAGTTTAATGGGAAAAATCCACTGGAGAAATACTCTACAACAGCTGGAGA GAGTTGGGCCGAGATCAGTTGGGGTCTGTCTCTTGACCTCTGCATTTGTTGGCATGGCTTTTACCATCCAGTTTGTTAGAGAGTTTACTAGATTAGGACT AAACAGATCTATTGGTGGGGTATTAGCTCTAGCCTTTTCAAGGGAGCTAAGTCCTGTGGTCACATCAATTGTGGTTGCTGGGCGTATCGGCAGTGCTTTT GCTGCAGAGTTGGGAACAATGCAGGTTTCTGAGCAAATTGACACATTAAGGGTTCTCGGAGCAGACCCAGTTGATTACTTGGTAATTCCAAGAGTGATTG CTTCCTGTCTCGCTCTCCCATTTTTGACTTTGATGTGTTTCACAGTGGGGATGGCATCCAGTGGCCTGCTGGCTGACAGTGTCTATGGGATTAGCCTTAA CATTATATTGGATTCAGCTCAGAGAGCTCTAAATTCATGGGATATAATTAGTGCAATGATCAAGTCAGGGGTTTTTGGTGCCATCATATCTATAGTGAGC TGTGCTTGGGGGGTTACCACAATGGGAGGCGCTAAAGGTGTTGGGGAGTCGACAACTTCAGCTGTGGTTATCTCGCTGGTTGGTATATTTATGGCTGACT TTGCACTCTCATATTGCTTCTTCCAGGGAGCTGGAGATTCTCTGAAGAATTGCGTATAA
AA sequence Show only first row Show all	>Potri.002G234400.1 pacid=42777046 polypeptide=Potri.002G234400.1.p locus=Potri.002G234400 ID=Potri.002G234400.1.v4.1 annot-version=v4.1 MQTTSQLHSIFYYSNRRSYLKPNGWIKTKSLNFSQLGFSRHCQMYKFTSPVQQTKLFVLPNMDDGNPSVPMSILEEDTNTNHAPSSGGEKFLSKWSPPRY LWRGLSVLVLAGQVIIRSLMGKIHWRNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSIGGVLALAFSRELSPVVTSIVVAGRIGSAF AAELGTMQVSEQIDTLRVLGADPVDYLVIPRVIASCLALPFLTLMCFTVGMASSGLLADSVYGISLNIILDSAQRALNSWDIISAMIKSGVFGAIISIVS CAWGVTTMGGAKGVGESTTSAVVISLVGIFMADFALSYCFFQGAGDSLKNCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Potri.002G234400 [exp]	0	1
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	1.00	0.9487
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	4.00	0.9210	Pt-ANL2.1
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.004G177400 [exp]	7.74	0.9077
AT5G15140			Galactose mutarotase-like supe...		Potri.017G080000 [exp]	10.19	0.9092
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Potri.007G098700 [exp]	10.48	0.9185
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Potri.006G006200 [exp]	10.95	0.8799
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	11.61	0.9008
AT5G19500			Tryptophan/tyrosine permease (...		Potri.001G224950 [exp]	12.84	0.9202
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Potri.005G091600 [exp]	14.07	0.9083
AT1G22430			GroES-like zinc-binding dehydr...		Potri.018G142700 [exp]	16.52	0.8939	HNL.4

Compare expression of checked genes

Potri.002G234400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.