Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26570 1560 / 0 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) AT4G24450 160 / 2e-39 PWD, GWD3, ATGWD2 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) AT1G10760 160 / 2e-39 GWD1, GWD, SOP1, SOP, SEX1 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) AT5G01260 55 / 2e-07 Carbohydrate-binding-like fold (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147900 [exp] 2009 / 0 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.010G044100 [exp] 178 / 5e-45 AT1G10760 1875 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.008G188150 [exp] 165 / 7e-41 AT1G10760 1781 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.006G099200 [exp] 51 / 4e-06 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2) Potri.016G114500 [exp] 49 / 2e-05 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2) Potri.009G044800 [exp] 47 / 4e-05 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037434 [exp] 1629 / 0 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10041275 [exp] 1562 / 0 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10013044 [exp] 172 / 3e-43 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10029118 [exp] 170 / 2e-42 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10032829 [exp] 154 / 2e-37 AT4G24450 1571 / 0.0 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) Lus10035528 [exp] 56 / 3e-07 AT2G40070 280 / 4e-83 unknown protein Lus10027767 [exp] 56 / 3e-07 AT2G40070 288 / 5e-86 unknown protein Lus10002495 [exp] 51 / 5e-06 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10004826 [exp] 49 / 2e-05 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF00686 [poplar] [flax] CBM_20 Starch binding domain CL0179 [poplar] [flax] ATP-grasp PF01326 [poplar] [flax] PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G234500.1 pacid=42777330 polypeptide=Potri.002G234500.1.p locus=Potri.002G234500 ID=Potri.002G234500.1.v4.1 annot-version=v4.1 ATGGATTCGCTGCGTGCATTGCTTCGCTCAGATTTTATCTATCTTACTCCAACAAGAAACCAATTCCAATCTCTCCATAAAGTTGCTCCAGCGGGAGGCA CTTCCACGCCATTCTTCAATCCAAGGATTTCGATTCCCATTCGCAGAAGAATTGTTTGCGGTGTTTCCTCTACTCAATCCAGAGAACAAGAGAAGGCAAT GAGGAAAAGCAGGTCAAGGTTGGAACGTGGAAAGGTGAGGCTAAATGTAAGGGTGGATCACCAAGTTGAATTTGGGGAGCAAATTGTGATTTTGGGGTCG ACTAAAGAACTGGGTTCGTGGAAGAAGAGGGTTCCGATGAATTGGACGGAGAATGGATGGGTTTGTGATTTGGAGATGAAAGGGGGTGGCATTGTTGAGT TTAAGTTTGTTATTGTGAGCAAGGACAGAAGTTTTGTGTGGGAAAGTGGGGATAACCGGGCTTTGAGGCTGCCCAGAGGAGGGAGTTTTGCGGTTGTTTG TAAATGGGATGCAACTGGGGAGGCTGTCAATTTGTTGCCTTTGGAGTTGGAACATAACGGAGAGGAAGTGGAGGATGCAGGTGAGAATGGTTCGGCTAGT GCTGGTGTTCTTTTGGAGGTGGAGACAAGTCCTTTTGTTGGGCAGTGGCAAGGGAAGGCCATATCTTTCATGCGGTCAAATGAGCATCGGAACAGAGAAG CTGAAAGAAGATGGGACACTTCAGGTCTTCAGGGGTTTGCGTTGAAGTTAGTTCAAGGTGACTTGAATGCAAGAAATTGGTGGAGAAAGCTTGAAGTTGT ACGTGAGCTACTAGTTGGAAGTCTTCAGAGTGAGGACAGGTTGGAGGTTTTAGTATACTCTGCTATCTATTTGAAGTGGATAAACACAGGGCAAATTCCA TGCTTTGAAGATGGAGGTCATCACCGGCCAAATCGGCATGCTGAAATTTCCAGGCTTATATTCCGGGAATTAGAACGAATCTCTTCGAGGAAAGATACTT CACCACAGGAAGTGCTTGTTATTCGAAAAATCCATCCTTGTTTGCCATCTTTCAAGGCAGAATTCACAGCATCTGTTCCTCTTACTCGGATTAGAGATAT TGCTCATCGGGGCGACATTCCTCATGACCTTAAGCAAGAAATCAAACATACTATACAAAACAAACTTCATCGCAATGCTGGCCCAGAAGATTTAGTTGCT ACTGAAGCAATGCTTGCAAGAATTACGAAGAACCCTGGGGAATATAGTGAAGCATTTGTCGAGCAATTCAAAATATTCCATCATGAACTCAAAGATTTCT TCAATGCAGGAAGTCTTGCTGAACAACTTGTATCAATTATAGAATCCTTGGATGAAAGGGGCTCTTCAGCTCTTACATTGTTTTTGGATTGCAAAAAGAA TTTAGATGCTTCAGAAGAATCCCACAATATTTTTGAACTGATCAAAATCATGCGGTCCCTGAATGCTCTGAGAGATATAATTGTAAAAGGTCTTGAAAGT GGTCTTAGGAATGATGCTCCTGATGCTGCAATAGCTATGCGTCAAAAGTGGCGCCTATGTGAGATTGGTCTTGAGGACTATTTGTTTGTTCTTCTGAGCA GGTTTCTCAATGCGCTTGAAGCTGCGGGAGGGGCTAAATGGCTTGCAGACAATGTGGAGTCAAAGAATATAAGCTCTTGGAATGACCCTCTTGGTGCCCT GATTGTTGGTGTTCGTCAGCTCGGTTTATCTGGTTGGAGACCAGAAGAATGTGCAGCTATTGGAACTGAGCTCCTTGCTTGGCAAGAGAAAGGTCTCTTT GAAAAGGAAGGAAGTGAAGATGGCAAGATAATTTGGGCGCTAAGGCTCAAAGCAACTCTTGATAGAGCAAGAAGGCTCACCGAGGACTATTCTGAAGCAC TTCTTCAAATATTTCCACAAAGAGTGCAGATACTAGGAAAAGCACTTGGGATTCCTGAAAACAGTGTAAGGACGTACACTGAAGCTGAGATTCGTGCCGG GGTAATTTTTCAGGTTTCAAAACTTTGTACCCTGCTTTTGAAAGCAGTTAGAAGTACCCTTGGTTCTCATGGCTGGGATATTCTTGTTCCTGGATCAGCT ATCGGCACATTAGTACAGGTTGAGAGCATTGTGCCTGGATCATTGCCATCGACTGTAGAGGGACCTATTGTTCTTGTTGTGAACAAAGCTGATGGAGATG AAGAGGTAACAGCTGCTGGTAGTAACATAGTGGGAGTTGTACTTCTGCAAGAGCTGCCTCACTTATCCCATCTTGGTGTCAGGGCCCGGCAAGAGAGGGT TGTCTTTGTGACATGTGAAGATGATGATGAAGTTGCTGCTATGCAAAAGCTTACTGGAAAATATGTGAGGTTGGAAGCTTCCTTGACTGGTGTAAATCTA ACTCTCTCTTCGTCAAATGATATTGTTGCAGAAGATCTTTCACGCAATGATTCATCTACAGTTGAACTTCCTGGATCTCACAATCCATCCTGGTCTGCTG TTAAAACTCACTCCAGTCAGGGTGTTTCCGCTGGAGGTGTTATTCTACTCGCAGATGCAGATGCAGATGCACAAACATCAGGCGCAAAGGCTGCTGCTTG TGGTCGCTTAGCTTCTTTGGCTGCAGTTTCAAGAAAGGTTTCTAGTGACCAAGGGGTGCCAGCTTCGTTTCAAGTTCCTAAGGGCGTGGTTATACCTTTT GGTTCTATGGAATTGGCACTTGAGCATAGCAAATCTATGGAAACATTCATGTCATTTCTAGAAGAGATAGAGACAGCTAAGCTGGATGGGGGCGAACTTG ACAAACTATGCTTTAAACTTCAGGAACTGATCTCTTCCTTGCAGCTCCCAAAAGACATCGTCGATGGAATAGGTCGAATGTTTCCAGACAATGCAAGACT GATTGTACGTTCAAGTGCCAATGTCGAGGACTTGGCTGGAATGTCAGCTGCTGGACTTTACGAATCAATCCCTAATGTTAGCCCATCAAATCCAATTGTA TTCGCAAATGCTGTTAGCCAAGTATGGGCTTCCTTGTACACACGGAGAGCAGTTCTAAGTCGTCGAGCTGCTGGTGTGCCTCAGAAAAATGCTGCAATGG CAGTTCTGGTGCAAGAAATGCTTTCGCCAGAGCTCTCATTTGTTCTTCACACACTCAGCCCAACTGACCGTGATCAGAATTCTGTTGAGGCAGAGATTGC CCCTGGACTGGGTGAGACCCTAGCTTCTGGCACCAGGGGTACTCCATGGCGTCTTTCATGTGGGAAGTTTGATGGGCATGTGAGAACACTTGCATTTGCA AATTTCAGTGAGGAGATGCTGGTATCTGGTGCGGGTCCTGCTGATGGTGATGTAAATCGTTTGACTGTAGACTACAGCAAGAAACCACTAACAATTGATC CAATATTCCGTCACCAGCTGGGTCAGCGTCTCTGTTCAATTGGCTTTTTCCTCGAAAGGAAGTTCGGCTGCCCACAAGATGTGGAAGGATGTGTGGTTGG AAAAGATATCTTTGTCGTCCAGACTCGCCCGCAACCTCAGTAA
AA sequence Show only first row Show all	>Potri.002G234500.1 pacid=42777330 polypeptide=Potri.002G234500.1.p locus=Potri.002G234500 ID=Potri.002G234500.1.v4.1 annot-version=v4.1 MDSLRALLRSDFIYLTPTRNQFQSLHKVAPAGGTSTPFFNPRISIPIRRRIVCGVSSTQSREQEKAMRKSRSRLERGKVRLNVRVDHQVEFGEQIVILGS TKELGSWKKRVPMNWTENGWVCDLEMKGGGIVEFKFVIVSKDRSFVWESGDNRALRLPRGGSFAVVCKWDATGEAVNLLPLELEHNGEEVEDAGENGSAS AGVLLEVETSPFVGQWQGKAISFMRSNEHRNREAERRWDTSGLQGFALKLVQGDLNARNWWRKLEVVRELLVGSLQSEDRLEVLVYSAIYLKWINTGQIP CFEDGGHHRPNRHAEISRLIFRELERISSRKDTSPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRGDIPHDLKQEIKHTIQNKLHRNAGPEDLVA TEAMLARITKNPGEYSEAFVEQFKIFHHELKDFFNAGSLAEQLVSIIESLDERGSSALTLFLDCKKNLDASEESHNIFELIKIMRSLNALRDIIVKGLES GLRNDAPDAAIAMRQKWRLCEIGLEDYLFVLLSRFLNALEAAGGAKWLADNVESKNISSWNDPLGALIVGVRQLGLSGWRPEECAAIGTELLAWQEKGLF EKEGSEDGKIIWALRLKATLDRARRLTEDYSEALLQIFPQRVQILGKALGIPENSVRTYTEAEIRAGVIFQVSKLCTLLLKAVRSTLGSHGWDILVPGSA IGTLVQVESIVPGSLPSTVEGPIVLVVNKADGDEEVTAAGSNIVGVVLLQELPHLSHLGVRARQERVVFVTCEDDDEVAAMQKLTGKYVRLEASLTGVNL TLSSSNDIVAEDLSRNDSSTVELPGSHNPSWSAVKTHSSQGVSAGGVILLADADADAQTSGAKAAACGRLASLAAVSRKVSSDQGVPASFQVPKGVVIPF GSMELALEHSKSMETFMSFLEEIETAKLDGGELDKLCFKLQELISSLQLPKDIVDGIGRMFPDNARLIVRSSANVEDLAGMSAAGLYESIPNVSPSNPIV FANAVSQVWASLYTRRAVLSRRAAGVPQKNAAMAVLVQEMLSPELSFVLHTLSPTDRDQNSVEAEIAPGLGETLASGTRGTPWRLSCGKFDGHVRTLAFA NFSEEMLVSGAGPADGDVNRLTVDYSKKPLTIDPIFRHQLGQRLCSIGFFLERKFGCPQDVEGCVVGKDIFVVQTRPQPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Potri.002G234500 [exp]	0	1
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Potri.014G170300 [exp]	10.09	0.8655
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	13.07	0.8622
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.002G157200 [exp]	13.41	0.8472
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.001G351800 [exp]	13.85	0.8590
AT1G68890			magnesium ion binding;thiamin ...		Potri.010G135500 [exp]	14.49	0.8081
AT5G62270			unknown protein		Potri.017G017901 [exp]	16.27	0.7934
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Potri.008G195200 [exp]	18.49	0.8068
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Potri.007G008500 [exp]	22.29	0.8447	XTH2.2
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	25.49	0.8389
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	26.45	0.8555

Compare expression of checked genes

Potri.002G234500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.