Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07880 213 / 5e-69 SCN1 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) AT1G62450 183 / 1e-57 Immunoglobulin E-set superfamily protein (.1) AT1G12070 172 / 2e-53 Immunoglobulin E-set superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010500 [exp] 209 / 2e-67 AT3G07880 317 / 5e-110 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G223200 [exp] 207 / 5e-67 AT3G07880 328 / 2e-114 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.016G013700 [exp] 206 / 3e-66 AT3G07880 314 / 5e-109 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.014G163000 [exp] 201 / 3e-64 AT3G07880 329 / 7e-115 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G259200 [exp] 154 / 3e-46 AT3G07880 184 / 4e-58 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012352 [exp] 208 / 2e-67 AT3G07880 308 / 6e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10006400 [exp] 206 / 3e-66 AT3G07880 313 / 1e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10001732 [exp] 205 / 4e-66 AT3G07880 310 / 6e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10002272 [exp] 204 / 8e-66 AT3G07880 309 / 1e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10027327 [exp] 197 / 3e-63 AT3G07880 303 / 2e-105 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10003794 [exp] 196 / 8e-63 AT3G07880 306 / 2e-106 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10039029 [exp] 189 / 7e-60 AT3G07880 300 / 5e-104 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10010491 [exp] 190 / 2e-59 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF02115 [poplar] [flax] Rho_GDI RHO protein GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Potri.002G234600.1 pacid=42779327 polypeptide=Potri.002G234600.1.p locus=Potri.002G234600 ID=Potri.002G234600.1.v4.1 annot-version=v4.1 ATGTCAGCTGCTGTAAGGACTCGCACAGCATCCCAAGAAGTTTCTTTCAGTAATGAGATGGAGAATCTAGGACTAAATGACCACAACATCAAGGCTGCTG CTGCTGCTGCTGCAGCTGAAGAAAAAGCAGAGAAGGACCATGAAGAAGATGATTCTGTTGATGACATTGAAGAAGATGGTTCGAAGCTCCAGTCTGATCA TAAGGAATTGGATCTTGGGCCTCAAGTTTCCCTGAAGGAGCAGCTTGAAAAAGATAAGGATGACGACAGCTTAAGGAGATGGAAGGAACAGCTACTTGGG AGTGTTGATATGTCTGCTGTAGGAGAAAGCAAAGAACCAGAAGTGAAGATATTAAGTCTTTCAATCTTATGCCCGGGCCGTCCAGATCTTGTATTGCCAT TTCCATTCAATAGTAATTCGAAGAGCAGTAGCCTCTTCACCCTCAAGGAGGGAAGCCTGTACCACCTCAAGTTATGCTTCACTGTCTCCAACAACCTTGT ATCTGGTCTCAAGTACACCAATACTGTCTGGAAGACAGGCGTGAGAGTGGACCGTACAAAGGTGATGCTCGGTACCTTTAGCCCACAAAAGGAGCCTTAC AGATATGAACTAGAAGAAGAAACTACCCCTTCAGGCATTTTTGCTAGGGGCTCTTATTCTGCTAGAACCAAGATCGTGGATGATGATGGGAAATGCTATT TGGATGTCAGCTACTGCTTTGAAATCCAAAAACGCTGGCCTTCGAGCTAG
AA sequence Show only first row Show all	>Potri.002G234600.1 pacid=42779327 polypeptide=Potri.002G234600.1.p locus=Potri.002G234600 ID=Potri.002G234600.1.v4.1 annot-version=v4.1 MSAAVRTRTASQEVSFSNEMENLGLNDHNIKAAAAAAAAEEKAEKDHEEDDSVDDIEEDGSKLQSDHKELDLGPQVSLKEQLEKDKDDDSLRRWKEQLLG SVDMSAVGESKEPEVKILSLSILCPGRPDLVLPFPFNSNSKSSSLFTLKEGSLYHLKLCFTVSNNLVSGLKYTNTVWKTGVRVDRTKVMLGTFSPQKEPY RYELEEETTPSGIFARGSYSARTKIVDDDGKCYLDVSYCFEIQKRWPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.002G234600 [exp]	0	1
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Potri.006G041400 [exp]	11.22	0.9037
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	12.92	0.9049
AT1G61900			unknown protein		Potri.004G016000 [exp]	14.24	0.8704
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.016G065700 [exp]	15.09	0.8992	CPK20,CPK20.2
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.009G168500 [exp]	15.42	0.8660
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.009G031200 [exp]	18.97	0.9022
AT1G05090			dentin sialophosphoprotein-rel...		Potri.002G227200 [exp]	20.71	0.8894
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	30.49	0.8960
AT5G11960			Protein of unknown function (D...		Potri.018G060500 [exp]	31.06	0.8964
AT4G00560			NAD(P)-binding Rossmann-fold s...		Potri.014G079700 [exp]	31.30	0.8916

Compare expression of checked genes

Potri.002G234600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.