Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PDS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14210 898 / 0 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) AT3G04870 202 / 1e-57 SPC1, PDE181, ZDS SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) AT3G59050 45 / 0.0001 ATPAO3 polyamine oxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148700 [exp] 1042 / 0 AT4G14210 940 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.005G050700 [exp] 214 / 7e-62 AT3G04870 926 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.013G037700 [exp] 212 / 3e-61 AT3G04870 953 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Potri.004G177400 [exp] 63 / 3e-10 AT4G14210 79 / 2e-15 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Potri.001G344800 [exp] 51 / 2e-06 AT3G09580 540 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.017G144001 [exp] 45 / 8e-05 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 45 / 0.0001 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.008G170300 [exp] 44 / 0.0003 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 44 / 0.0004 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041260 [exp] 902 / 0 AT4G14210 951 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10021967 [exp] 902 / 0 AT4G14210 952 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10015935 [exp] 215 / 3e-62 AT3G04870 954 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10009190 [exp] 188 / 1e-52 AT3G04870 854 / 0.0 SPONTANEOUS CELL DEATH 1, PIGMENT DEFECTIVE EMBRYO 181, zeta-carotene desaturase (.1.2) Lus10024003 [exp] 55 / 2e-07 AT4G14210 64 / 1e-10 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G235200.1 pacid=42776783 polypeptide=Potri.002G235200.1.p locus=Potri.002G235200 ID=Potri.002G235200.1.v4.1 annot-version=v4.1 ATGAGTACATTGAACTTGGGCTGGCACTATAAATCATTTGATCCTCAAACTGCCTTGAGATGTGGCGCTTATCCTGCTTTTTCTCACCAAGCTAATGCAC TAGCTTTTAGAGGTAGTGAATCAATGGGCCATGCTTTGAAAATCCCTTTTGGAAATACTTCTGCTAGAAGAAGACTGATGAATCATATCCACCCTCCTTT GCGGGTTGTCTGTGTAGACTACCCAAGACCGGACCTTGATAACTCGGTGAATTTCTTAGAAGTTGCCTTGTTATCTTCATCCTTTCGCTCTTCTCTGCGT CCATCTAAACCATTGAAGGTTGTCATTGCTGGTGCAGGTTTGGCTGGTTTATCTACTGCAAAATATTTGGCAGATGCAAGCCATAAGCCTGTATTGCTTG AAGCAAGAGATGTTCTAGGTGGAAAGGTGGCTGCATGGAAAGATGACGATGGAGATTGGTACGAGACAGGCTTGCATATATTCTTTGGGGCGTATCCAAA TGTGCAGAACCTTTTTGGTGAACTTGGTATCAATGATAGGTTGCAGTGGAAGGAGCATTCTATGATATTTGCAATGCCAAATAAGCTAGGAGAATTCAGT CGATTTGATTTTCCTGAAGTTCTCCCTGCACCATTAAATGGGATATTGGCCATTTTGAAGAACAATGAAATGCTAACTTGGCCAGAGAAAGTGAAGTTTG CAATTGGGCTCCTGCCTGCAATGGTTGGTGGACAGGCATATGTTGAGGCTCAAGATGGTTTGAGTGCTCAAGAGTGGATGAGAAAGCAGGGTGTGCCTGA TAGAGTGACTACTGAGGTGTTTATTGCCATGTCGAAGGCTCTTAACTTTATTAACCCAGATGAACTTTCAATGCAATGCATTTTGATAGCTTTGAACCGA TTTCTTCAGGAGAAACATGGTTCAAAGATGGCTTTCTTGGATGGTAATCCCCCGGAGAGACTCTGCATGCCAATCGTCGATCATATTCAGTCGCTTGGTG GTGAAGTCAAACTCAATTCACGGATAAAGAAAATTGAGCTAAATGATGATGGAACAGTGAAGAGATTTTTAGTAAATTCTGGGGACGTGATTGAAGGGGA TGTTTATGTGTTTGCGACTCCAGTTGATATTTTAAAGCTTCTTTTGCCTGATAACTGGAAGGAGATTCCTTACTTCAAGAAATTGGAGAAATTAGTTGGA GTTCCCGTTATCAACGTTCACATATGGTTTGACAGGAAACTGAAGAATACATATGATCACCTACTTTTCAGCAGAAGTCCCCTTCTCAGTGTGTATGCTG ACATGTCTGTGACATGCAAGGAATATTATGACCCAAAGCAGTCAATGCTGGAGTTAGTTTTTGCGCCTGCTGAAGAATGGATTTCACGGAGTGACTCGGA GATCATTGATGCTACAATGGGGGAACTTGCAAAACTTTTTCCTGATGAAATATCCACAGATCAGAGCAAAGCAAAAATAGTGAAGTATCATGTTGTTAAA ACTCCAAGGTCTGTTTACAAGACAGTCCCAAACTGTGAACCTTGCCGTCCCTCACAAAGATCTCCTATAGAGGGTTTCTATCTATCTGGTGCTGTTCTAT CAGGGAAGCTTTGTGCGCAGGCAATTGTACAGGATTATGAGTTGCTTGTTGCTCGGGGGCAAAGAGAGTTGACTGAGGCCACCATGAGTTAA
AA sequence Show only first row Show all	>Potri.002G235200.1 pacid=42776783 polypeptide=Potri.002G235200.1.p locus=Potri.002G235200 ID=Potri.002G235200.1.v4.1 annot-version=v4.1 MSTLNLGWHYKSFDPQTALRCGAYPAFSHQANALAFRGSESMGHALKIPFGNTSARRRLMNHIHPPLRVVCVDYPRPDLDNSVNFLEVALLSSSFRSSLR PSKPLKVVIAGAGLAGLSTAKYLADASHKPVLLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKLGEFS RFDFPEVLPAPLNGILAILKNNEMLTWPEKVKFAIGLLPAMVGGQAYVEAQDGLSAQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNR FLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGEVKLNSRIKKIELNDDGTVKRFLVNSGDVIEGDVYVFATPVDILKLLLPDNWKEIPYFKKLEKLVG VPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYDPKQSMLELVFAPAEEWISRSDSEIIDATMGELAKLFPDEISTDQSKAKIVKYHVVK TPRSVYKTVPNCEPCRPSQRSPIEGFYLSGAVLSGKLCAQAIVQDYELLVARGQRELTEATMS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.002G235200 [exp]	0	1	PDS.2
AT3G42170			BED zinc finger ;hAT family di...		Potri.017G019466 [exp]	3.46	0.9343
AT2G25770			Polyketide cyclase/dehydrase a...		Potri.018G046100 [exp]	6.00	0.9168
AT4G27190			NB-ARC domain-containing disea...		Potri.018G136700 [exp]	7.74	0.9106
AT5G36930			Disease resistance protein (TI...		Potri.011G008228 [exp]	8.66	0.9226
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121801 [exp]	12.64	0.9032
					Potri.011G014701 [exp]	14.69	0.8796
					Potri.005G108850 [exp]	19.05	0.8993
					Potri.006G095100 [exp]	19.89	0.8833
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.001G103100 [exp]	21.21	0.8772
AT5G05800			unknown protein		Potri.001G243108 [exp]	25.92	0.8925

Compare expression of checked genes

Potri.002G235200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.