Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PAKRP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23670 1399 / 0 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT4G14150 1325 / 0 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT3G44050 368 / 4e-107 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 373 / 1e-106 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 372 / 2e-106 POK1 phragmoplast orienting kinesin 1 (.1) AT3G20150 355 / 8e-104 Kinesin motor family protein (.1) AT5G47820 244 / 2e-66 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 242 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 241 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G36200 238 / 2e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149000 [exp] 2048 / 0 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.001G360200 [exp] 425 / 5e-128 AT3G20150 804 / 0.0 Kinesin motor family protein (.1) Potri.004G193700 [exp] 378 / 9e-111 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 379 / 2e-108 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.009G156000 [exp] 372 / 2e-108 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G026000 [exp] 242 / 1e-65 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 241 / 2e-65 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G013300 [exp] 238 / 3e-65 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 240 / 4e-65 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021969 [exp] 744 / 0 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10041262 [exp] 582 / 0 AT3G23670 559 / 8e-180 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10016589 [exp] 414 / 4e-124 AT3G20150 914 / 0.0 Kinesin motor family protein (.1) Lus10008438 [exp] 375 / 3e-109 AT3G44050 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027934 [exp] 378 / 7e-109 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10017113 [exp] 379 / 1e-108 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1) Lus10018341 [exp] 378 / 2e-108 AT3G19050 1074 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 377 / 1e-107 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10013377 [exp] 370 / 4e-106 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 247 / 2e-66 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.002G235500.3 pacid=42777105 polypeptide=Potri.002G235500.3.p locus=Potri.002G235500 ID=Potri.002G235500.3.v4.1 annot-version=v4.1 ATGAAGCACTTTATGCTACCAAGAAACCCGATCTTGAGAGAAGCAGCAGCGCATAATGAGCAGTCCCCAATCCCTAGCTCTCACAAGACGAAACCCTCGC CGTCGCCATCGCGGAGGACCAAATCGTCTAAAGAGAACGCTCCGCCTCCAGATCCGAACTCTATTACTTCCGATCTAAAGCCTTTGCCGTCCCCTGCCTC CGCTAAGTTGAAGAGTCCCTTGCCTCCTCGGCCTCCGTCTTCAAATCCTCTCAAGCGCAAGCTCAGCATGGAGACCTCGCCGGAGAACTCGCTCTCCGAT TCTGGCGTCAAGGTAATAGTGCGAATGCGGCCATTGAAAAAGGATGACAAGGAGGAAGGAGAGACGATAGTTCAGAAAATGTCTAATAATTCGTTGGCAA TCAATGGACAGACCTTCACTTTTGACTCAGTTTCAGACACAGGGGCCACTCAGCTAGACATGTTCCAACTTGTAGGAGCCCCTCTTGTGGAGAATTGTCT TGCTGGGTTTAACAGTTCTGTATTTGCCTATGGACAGACAGGGAGTGGAAAGACATTCACAATGTGGGGCCCAGCCAATGCTTTATCAAGTGAAAATTTA TCAGGTGATCTACAAGGTTTGACCCCCCGAGTCTTTCAGCGACTTTTTGATCGTATAAATGAGGAGCAAATTAAACATACTGACAAACAACTTAAGTATC AGTGTCGCTGCTCTTTTCTCGAGATCTATAATGAACAAATAACAGATTTGCTGGATCCAGGTCAAAGAAACCTTCAGATAAGAGAAGACATGCAAACTGG TGTTTATGTTGAAAATCTCAGAGAGGAGTACGTATTTACAATGAAAGATGTGACTCAACTCCTGATAAAGGGACTATCCAACAGGAGGACTGGCGCAACC AGCATAAATGCAGAGAGTTCCCGTTCACACAGTGTTTTCACCTGTGTTGTTGAATCTCGATGCAAGAGCATGGCAGATGGAATGAGCAGCTTGAAAACAA GCAGAATAAATCTTGTTGATCTAGCTGGATCAGAGAGACAGAAGTTAACTGGCACTGCAGGGGAACGGTTGAAGGAAGCAGGGAATATTAACCGATCTCT GTCACAGCTCGGGAACTTGATAAACATTCTTGCTGAGATTTCTCAAACAGGAAAGCAAAGGCATATACCTTACCGAGACTCCAGGTTGACGTTTTTATTA CAGGAATCACTTGGTGGCAATGCCAAATTAGCAATGGTGTGTGCTATTTCTCCAGCACAAAGTTGTAAGAGTGAAACTTTCAGTACATTGCGATTTGCAC AGCGTGCTAAGGCAATCAAGAATAAGGCCATTGTTAATGAAGAGGTGGAGGATGATGTGAATCACTTGCGAGAAGTAATACGGCAGCTAAGGGATGAATT GCACCGAGTGAAAGCAAATAGCAACAATCCAACAGGTTGGGATCCCCGTAAAAGTTTGAATATACTGAAAAGCCTTATCCATCCGCGTCCTCTATTACCT CAAGTAGATGAAGATGGTGATGAGATGATGGAAATTGATGAGGAAGCTGTTGAAAGGCTCTGCATTCAAGTAGGCCTGGGACCAGCAGGCTCTGCAGATG AGAATTATGTTGATGAAGGTAGATCTATCATCGAACAAGGGACTGAGGATACAGATGTTGACATGGAAGAAGCAATATCTGAACAAGCTGAGAATCATGA AATTCTGATTTCGAGTTGTGCTAAACCTGCTAGAAACACTTCAGAATCCTGTGAGGAGCCAGTTGAGGAGAAAAGGTTTCTTAGTTCCTCTGCCAGTAAA TTGATAACAGAAGAATCACCAAACGAAATGGTGGTGTTTGGGTCCTCATGCACTACTTCTGGTTCTGAAAATGGAAATTCCACTGGCATTTCTGCCACAG GTGAACCCAATGGTTCTCAAAATGAGACAGTGAATTGCATGTCTCCTTCTAGCCTCAGTATAGTTCCTTCTGAAGTTTCTCCTGTTCTTAAATCTCCAAC TCCAAGTGTTTCGCCTAGAATCAGCAGCAGCAGGAAAAGTTTGCGGACTTCATCAATGTTAACTGCTTCCCAGAAAGATTCCAAAGATGAAAGCAAGCCA GGACCAGAGAACATACGTATTTCTTTCACAAAATCCAACTCTTCTGCTGCTCTAACTGCTCAAACCAGTAAGAGTTGTCTTGCACCAACTGAACATTTAG CGGCGAGCCTTCACCGTGGCTTGGAAATTATTGATAGTCATCGCAAGAGTTCTGTATTTAGGCAATTGTCATTCAGGTTTGCCTGTAAACCTGCAGAATC TAACCCAATTCCGCTTGTTGATGTCGGTGTGCAAACTTTTCCTCAAGATGATGAGATATTAGAAAGAGTATTCTTGTGTGCGAATTGCAAGACCAAAACG CAGCTAGAGGTGAAAGATGTCGATGACAGCTCAAACCTACAGCTAGTACCCTTTGTTGGCTCAGAGTCTATTGACAAACCCAAAACGCAAGTTCCTAAAG CAGTGGAGAAGGTTTTGGCAGGAGCAATCAGGAGAGAAATGGCCCTGGAAGAGTTTTGTGCCAAACAAGCTTATGAGATAACACAGCTCAACCGTCTGGT TCAACAATACAAGCATGAGAGGGAATGCAATTCCATAATAGGGCAGACAAGGGAAGACAAAATTCTTCGGCTTGAGAGCCTCATGGATGGTGTTTTATCT ACTAAGGATTTCATGGAGGAAGAGTTAGCAGCACTCATGCACGAGCACAAGATTTTGAAGGAGAAATATGAGAATCATCCCGAAGTTTCAAAGATAAATA TTGAGCTGAAAAGAGTACAGGATGAGCTAGAACATTATCGAAACTTCTGTGATTTGGGTGAAAGGGAAGTCTTGTTGGAAGAGATTCATGATTTAAGAAG CCAGTTACAGTACTACACAGACTCTTCATCCCCATCTGCTCTAAAAAGGAATTCACTGCTGAAATTGACCTACTCGTGTGAGCCCAGTTTGGCTCCCCTT CTTAACACAATCCAGGAATCATCTGAGGAGAGTCCGGAGGAGAAACTTGAAATGGAGAGAACACGCTGGATGGATGCTGAGAGCAAGTGGATTTCTCTTG CTGAAGAATTGAGAGCTGAACTTGATGCTAGCAGGGCGTTAGCTGAAAAATTGAAGCAGGAATTGGGTACAGAGAAGAGATGTGCAGAAGAGCTGAAGGA AGCAATGCAAATGGCCATGGAGGGACATGCACGCATGCTTGAACAGTATGCAGATCTTGAGGAGAAACACATTCAATTACTTGCAAGGCACAGGCGGATA CAGGAAGGAATAGATGATGTCAAGAAAGCAGCTTCTAAAGCTGGAGTTAGGGGCGCCGAATCCAAGTTCATAAATGCTCTTGCTGCTGAAATTTCTGCAT TGAAAGCTGAAAGAGAAAAGGAGAGGCGATATTTTAGAGATGAAAGCAGGGGACTTCAGGGTCAACTGAGGGACACTGCTGAAGCTGTACAAGCAGCAGG TGAATTGCTTACGAGGTTGAAAGAAGCAGAAGAAGCTGCTGTTGTTGCCGAGAGGCGAGCTATGGAGGCAGAGCAAGAAGCTGTAAAGGCGAATAAACAT ATTAATAAGTTGAAGAGAAAACATGAAGACGAGATTAGTTCTCTAAAGGAGCTAGTGGCAGAGTCTCGTTTGCCCAAAGAAGCAAGACGACCTGCTCACA GTGATTGTGATATGCCAAAGTATGATGCAGGCGAGCCTCTTAGCGAAGGTGATGAACGATGGAGAGAGGAGTTCGAGCCGTTTTATAACGTGGAAGATGG TGAAGGTGAATTGTCAAAACTCGCCGAACCCTCAGCATGGTTCTCTGGTTATGATCGATGCAACATATAG
AA sequence Show only first row Show all	>Potri.002G235500.3 pacid=42777105 polypeptide=Potri.002G235500.3.p locus=Potri.002G235500 ID=Potri.002G235500.3.v4.1 annot-version=v4.1 MKHFMLPRNPILREAAAHNEQSPIPSSHKTKPSPSPSRRTKSSKENAPPPDPNSITSDLKPLPSPASAKLKSPLPPRPPSSNPLKRKLSMETSPENSLSD SGVKVIVRMRPLKKDDKEEGETIVQKMSNNSLAINGQTFTFDSVSDTGATQLDMFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTFTMWGPANALSSENL SGDLQGLTPRVFQRLFDRINEEQIKHTDKQLKYQCRCSFLEIYNEQITDLLDPGQRNLQIREDMQTGVYVENLREEYVFTMKDVTQLLIKGLSNRRTGAT SINAESSRSHSVFTCVVESRCKSMADGMSSLKTSRINLVDLAGSERQKLTGTAGERLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLL QESLGGNAKLAMVCAISPAQSCKSETFSTLRFAQRAKAIKNKAIVNEEVEDDVNHLREVIRQLRDELHRVKANSNNPTGWDPRKSLNILKSLIHPRPLLP QVDEDGDEMMEIDEEAVERLCIQVGLGPAGSADENYVDEGRSIIEQGTEDTDVDMEEAISEQAENHEILISSCAKPARNTSESCEEPVEEKRFLSSSASK LITEESPNEMVVFGSSCTTSGSENGNSTGISATGEPNGSQNETVNCMSPSSLSIVPSEVSPVLKSPTPSVSPRISSSRKSLRTSSMLTASQKDSKDESKP GPENIRISFTKSNSSAALTAQTSKSCLAPTEHLAASLHRGLEIIDSHRKSSVFRQLSFRFACKPAESNPIPLVDVGVQTFPQDDEILERVFLCANCKTKT QLEVKDVDDSSNLQLVPFVGSESIDKPKTQVPKAVEKVLAGAIRREMALEEFCAKQAYEITQLNRLVQQYKHERECNSIIGQTREDKILRLESLMDGVLS TKDFMEEELAALMHEHKILKEKYENHPEVSKINIELKRVQDELEHYRNFCDLGEREVLLEEIHDLRSQLQYYTDSSSPSALKRNSLLKLTYSCEPSLAPL LNTIQESSEESPEEKLEMERTRWMDAESKWISLAEELRAELDASRALAEKLKQELGTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRI QEGIDDVKKAASKAGVRGAESKFINALAAEISALKAEREKERRYFRDESRGLQGQLRDTAEAVQAAGELLTRLKEAEEAAVVAERRAMEAEQEAVKANKH INKLKRKHEDEISSLKELVAESRLPKEARRPAHSDCDMPKYDAGEPLSEGDERWREEFEPFYNVEDGEGELSKLAEPSAWFSGYDRCNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Potri.002G235500 [exp]	0	1	PAKRP1.2
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Potri.014G149000 [exp]	1.00	0.9689	Pt-PAKRP1.1
AT5G42700	B3		AP2/B3-like transcriptional fa...		Potri.014G031700 [exp]	2.44	0.9576
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	7.34	0.9492
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.013G048900 [exp]	7.74	0.9540	Pt-CDC20.4
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	7.74	0.9560
AT5G56120			unknown protein		Potri.001G470800 [exp]	8.12	0.9522
AT4G37110			Zinc-finger domain of monoamin...		Potri.012G044400 [exp]	9.59	0.9384
AT2G20635			ATP binding;protein kinases;pr...		Potri.007G139000 [exp]	10.95	0.9437
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.001G177100 [exp]	11.18	0.9533
AT1G72250			Di-glucose binding protein wit...		Potri.011G140000 [exp]	14.14	0.9472

Compare expression of checked genes

Potri.002G235500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.