Plant FIBer expression Database

Potri.002G235550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00210 50 / 2e-10 ATCG00210.1, YCF6 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem IIs (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G142332
[exp]
96 / 4e-28 ATCG00210 56 / 5e-13 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem IIs (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G235550.1 pacid=42780234 polypeptide=Potri.002G235550.1.p locus=Potri.002G235550 ID=Potri.002G235550.1.v4.1 annot-version=v4.1
ATGACTTTCCAGCAAGCAAACGGACCTGAATTGGATTTTTTGGATTGTTTCATCAATGCAAAATTCCTTCATATTCATAGAGATAGGGGACATAATTCAC
ATGGATATAGTAAGTCTCGTTTGGGCTGCTTTGATGGTAGTCTCTACATCTTCCCTTTCACTCGTGGTATGGGGAAGAAGTGGATTATAGGGATACTACT
AATTGAGTTGAGAAATAAAACTCTATCAATTCGTTTATAA
AA sequence
>Potri.002G235550.1 pacid=42780234 polypeptide=Potri.002G235550.1.p locus=Potri.002G235550 ID=Potri.002G235550.1.v4.1 annot-version=v4.1
MTFQQANGPELDFLDCFINAKFLHIHRDRGHNSHGYSKSRLGCFDGSLYIFPFTRGMGKKWIIGILLIELRNKTLSIRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G235550
[exp]
0 1
AT2G26250 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA syn... Potri.006G080400
[exp]
3.74 0.6678
Potri.001G227800
[exp]
12.36 0.6620
AT1G43760 DNAse I-like superfamily prote... Potri.004G128961
[exp]
13.41 0.5407
AT1G57775 Protein of unknown function (D... Potri.004G115251
[exp]
13.41 0.5731
AT1G57775 Protein of unknown function (D... Potri.004G115351
[exp]
14.49 0.5731
Potri.010G033266
[exp]
15.49 0.5731
AT4G32690 ATGLB3, GLB3 ARABIDOPSIS HEMOGLOBIN 3, hemo... Potri.018G036200
[exp]
15.81 0.5586
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.010G047800
[exp]
23.81 0.4925
AT1G43760 DNAse I-like superfamily prote... Potri.017G066550
[exp]
25.09 0.4733
AT4G08630 unknown protein Potri.005G044600
[exp]
25.51 0.4891

Potri.002G235550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.