Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42390 1822 / 0 SPP stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) AT5G56730 96 / 1e-19 Insulinase (Peptidase family M16) protein (.1) AT2G41790 56 / 2e-07 Insulinase (Peptidase family M16) family protein (.1) AT3G57470 54 / 9e-07 Insulinase (Peptidase family M16) family protein (.1), Insulinase (Peptidase family M16) family protein (.2), Insulinase (Peptidase family M16) family protein (.3) AT1G06900 45 / 0.0003 Insulinase (Peptidase family M16) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149200 [exp] 2266 / 0 AT5G42390 1815 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.006G050700 [exp] 56 / 2e-07 AT2G41790 1503 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Potri.013G154600 [exp] 48 / 6e-05 AT1G06900 1461 / 0.0 Insulinase (Peptidase family M16) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041263 [exp] 1899 / 0 AT5G42390 1789 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Lus10021970 [exp] 1182 / 0 AT5G42390 1122 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Lus10021971 [exp] 672 / 0 AT5G42390 629 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Lus10012918 [exp] 96 / 1e-19 AT5G56730 1501 / 0.0 Insulinase (Peptidase family M16) protein (.1) Lus10018072 [exp] 56 / 2e-07 AT2G41790 1451 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10042213 [exp] 51 / 8e-06 AT1G06900 1311 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10018071 [exp] 47 / 0.0002 AT2G41790 1377 / 0.0 Insulinase (Peptidase family M16) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [poplar] [flax] Peptidase_ME PF05193 [poplar] [flax] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Potri.002G235700.4 pacid=42778700 polypeptide=Potri.002G235700.4.p locus=Potri.002G235700 ID=Potri.002G235700.4.v4.1 annot-version=v4.1 ATGGCGAGTACAGCTGCCCCAAGCTCTGTATTGATGACGAGCTTGCCTCAAATCCGTACAGATGATACTTTCTCAAGGAAGAACCGGATAAACCTAATTC GTTCCCCTTTGATTCGATTCCAAGCCAGCCATCATCAATCTTGTCATTGCATTTCCTCCAAAAGGTGGAAACATGAGTTTGCTGCCGGTAGATCAGGTAC TAGTAGAAAGAAGAATAATGCTTGGAAACATTGTAGTTCGTTCCTTGGTGAGAGAGTGGTTGAGGCATCTTTTCCAGAACAATTTAAGTGCATGTCTTGC TCCCTTAACCGCCGTAGAAGCCGCTATAGCATCAAGAGATCTATACCTAGAGCCTTTATTGATAAGTCTGCTTTTCGTTTGTCTGGCCATTCATTCGATA CTGCTTCTGCAAAGCATGTTCATGTCCCATGTGCATCAATGGGTCCAAATGAGCCACATGCAGCAAGTATAGCCTGCCCAGATGGTATTCTTGAGAGACA AGATTCCCATTTATTAGATTCTGAATTAGAAAGAGCAAGACTACTTGAGTTTTTGAATTCTGAACTTCCATGTCACCCCAAGTTACACAGAGGACAACTG AAAAATGGACTCTGTTATCTGATTCTACCAAATAAAGTTCCACCAAACAGGTTTGAGGCACACATGGAAGTTCATGTAGGATCAATAGACGAGGAAGATG ATGAGCAAGGAATTGCACATATGATTGAACATGTTGCATTCCTTGGAAGTAAGAAACGTGAGAAACTTCTTGGAACAGGGGCCCGATCTAATGCTTACAC TGATTTCCACCATACAGTGTTCCACATTCATTCACCAACTTGTACAAAGGATGCTGATGGAGATCTACTCCCCTCTGTGTTGGATGCCTTGAATGAGATA GCTTTCCACCCGAGCTTCCTCGCTTCTCGAGTTGAAAAGGAAAGGCGTGCTATACTTTCAGAACTACAGATGATGAATACTATAGAATATCGTGTTGACT GCCAGTTGTTACAACATCTACATTCAGAAAACAAGCTGAGCAAAAGGTTCCCAATAGGATTGGAAGAGCAGATTAAGAAGTGGGATGCAGAGAAAATTAG GAAATTCCATGAGCGTTGGTACTTCCCAGCAAATGCAACTCTATACATTGTTGGTGACATTGATAACATTTCAAAGACGGTTCACCAAATTGAAAATGTC TTTGGACAAACTGGCCTGGAAAACAAGACAGTTTCTGCTCCTTCTCCAAGTGCATTTGGTGCAATGGCTAGTTTTCTTGCTCCTAAGGTCTCAGTTGGGC TCCCTGGAAGTTCATCTCGTGAAAAGTCATCTAGTTCTCTAGACCAATCCAAAATCATTAAAAGGGAAAGGCATGCAGTCCGTCCTCCTGTCGAGCATTA TTGGTCTCTTCCTGGAAGCAATGCAAATTTGAAGCCACCACAGATATTTCAGCATGAGTTTCTTCAGAATTTCTCAATTAATATGTTCTGCAAGATTCCG GTGAGCAAGGTCCAAACGAATGGTGACTTGTGCAGTGTTTTGATGAAGAGAATATTTCTATCTGCACTGCACTTCCGAATTAATACAAGATACAAGAGTT CAAATCCACCATTCACTTCAGTTGAATTGGATCATAGTGATTCTGGAAGGGAAGGATGCACTGTCACAACTCTTACAGTGACTGCAGAACCCAAGAATTG GCAAAATGCAATTAAAGTTGCTGTTCAGGAGGTTCGAAGGCTTAAAGAATTTGGTGTCACAAAGGGTGAATTAACTCGCTATATGGATGCACTTTTAAAA GATAGCGAACATCTGGCAGCTATGATTGATAATGTATCATCTGTTGATAATTTGGAATTTATCATGGAGAGTGATGCTCTTGGCCATACTGTGATGGATC AGAGACAAGGACATGAGAGTTTGTTTGCTGTTGCTGGAATGGTCACACTTGAAGAAGTCAATTCTATTGGTGCCAAGTTATTAGAATTTATCTCTGATTT TGGAAAACCTACTGCGCCCATTCCTGCAGCAATCGTTGCATGTGTTCCTACAAAAGTGCATATTGATGGATTGGGTGAAACCGAGTTCAAGATATCCTCA AGTGAGATTACAGCTGCCATAAAATCAGGATTGGAGGAAGCAATTGAGGCTGAGCCAGAGCTTGAAGTGCCAAAAGAATTGATATCTTCAACACAGTTAG AGGAGTTAAGGTTAGAACGTAGGCCATCCTTTGTTCCCTTACTTCCAGATGCAGGCTATACGAAATTGCATGACCAAGAAACAGGCATCACTCAGTGTCG TCTTTCAAATGGAATTGCTGTAAATTACAAGATATCCAAAAGTGAATCCCGGGGAGGTGTCATGCGGCTTATTGTGGGTGGGGGCCGAGCAGCTGAAAGT TCCGAGTCTAAAGGAGCTGTTGTTGTGGGTGTTCGAACTCTCAGTGAGGGTGGTCGTGTTGGCAGCTTTTCGAGAGAGCAGGTAGAACTTTTTTGTGTGA ATCACCTAATAAATTGCTCTTTGGAGTCAACTGAGGAATTTATTTGTATGGAGTTCCGCTTCACTCTGCGAGACAATGGGATGCAAGCAGCATTTGAATT ACTTCATATGGTACTTGAGAATAGTGTCTGGCTGGATGATGCATTTGACAGAGCAAGGCAACTCTACTTGTCATATTACCGGTCCATTCCCAAAAGCTTA GAACGGGCAACTGCTCACAAGCTCATGACAGCAATGTTGAATGGGGATGAGCGGTTCATTGAGCCAACCCCACAATCATTACAAAATTTAACACTGAAAT CCGTAAAAGATGCAGTGATGAATCAGTTTGTTGGTGGAAACATGGAGGTAAGTATTGTTGGAGATTTCTCAGAGGAGGAGGTTCAGTCTTGCATTATTGA TTACCTGGGCACAGTTAGAGCAACAAGAGATTCTGATCAGGAACAAGAATTTAATCCTGTCATGTTTCGACCATCCCCTTCTGATTTGCAGTTTCAACAA GTGTTTTTGAAGGATACTGATGAGAGAGCATGTGCATATATTGCTGGTCCTGCACCAAATCGTTGGGGTTTCACTGTTGATGGAACAGACCTGTTCAAGT CAATGAGTGGCTTTTCGGTTTCAGCTGCTGGCCAATGCTTTGCAGATGCACAACCAATATCTGAAACACAACAGATAGACGGGATGGATGTTCAGAAGGA TATGCAAGGAAAACTTCGCTGTCATCCACTCTTCTTTGGCATAACAATGGGGCTACTGGCTGAGATCATAAATTCTCGGCTTTTTACCACAGTTAGGGAT TCTCTTGGGTTGACATATGATGTATCGTTTGAGTTAAGCCTATTTGATAGGCTTAAGCTTGGTTGGTATGTTGTATCAGTAACATCAACTCCAGGCAAGG TACATAAAGCGGTTGATGCATGCAAAAGTGTTCTTAGAGGGTTGCATAGCAACAAGGTTGCCCAGAGAGAGTTGGACAGGGCAAGACGGACGCTGCTAAT GAGACATGAAGCTGAGATTAAGTCCAATGCCTATTGGCTTGGATTGCTTGCTCATTTGCAAGCCTCTTCTGTTCCGAGAAAGGACGTCTCATGTATTAAA GATCTCACTTCACTCTATGAAGCTGCCACAATTGAGGACATATACCTTGCATATGAACAATTGAAAGTAGATGAGGATTCTCTGTATTCATGCATTGGGG TTGCTGGGACACAAGCTGGAGAGGAGATTAATGCTCCATTAGAAGTGGAAGAAACAGATGATGGTTTGCAGGGAGGCATACCTGTGGGACGTGGTTTGTC TACAATGACACGACCAACAACCTGA
AA sequence Show only first row Show all	>Potri.002G235700.4 pacid=42778700 polypeptide=Potri.002G235700.4.p locus=Potri.002G235700 ID=Potri.002G235700.4.v4.1 annot-version=v4.1 MASTAAPSSVLMTSLPQIRTDDTFSRKNRINLIRSPLIRFQASHHQSCHCISSKRWKHEFAAGRSGTSRKKNNAWKHCSSFLGERVVEASFPEQFKCMSC SLNRRRSRYSIKRSIPRAFIDKSAFRLSGHSFDTASAKHVHVPCASMGPNEPHAASIACPDGILERQDSHLLDSELERARLLEFLNSELPCHPKLHRGQL KNGLCYLILPNKVPPNRFEAHMEVHVGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTCTKDADGDLLPSVLDALNEI AFHPSFLASRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDAEKIRKFHERWYFPANATLYIVGDIDNISKTVHQIENV FGQTGLENKTVSAPSPSAFGAMASFLAPKVSVGLPGSSSREKSSSSLDQSKIIKRERHAVRPPVEHYWSLPGSNANLKPPQIFQHEFLQNFSINMFCKIP VSKVQTNGDLCSVLMKRIFLSALHFRINTRYKSSNPPFTSVELDHSDSGREGCTVTTLTVTAEPKNWQNAIKVAVQEVRRLKEFGVTKGELTRYMDALLK DSEHLAAMIDNVSSVDNLEFIMESDALGHTVMDQRQGHESLFAVAGMVTLEEVNSIGAKLLEFISDFGKPTAPIPAAIVACVPTKVHIDGLGETEFKISS SEITAAIKSGLEEAIEAEPELEVPKELISSTQLEELRLERRPSFVPLLPDAGYTKLHDQETGITQCRLSNGIAVNYKISKSESRGGVMRLIVGGGRAAES SESKGAVVVGVRTLSEGGRVGSFSREQVELFCVNHLINCSLESTEEFICMEFRFTLRDNGMQAAFELLHMVLENSVWLDDAFDRARQLYLSYYRSIPKSL ERATAHKLMTAMLNGDERFIEPTPQSLQNLTLKSVKDAVMNQFVGGNMEVSIVGDFSEEEVQSCIIDYLGTVRATRDSDQEQEFNPVMFRPSPSDLQFQQ VFLKDTDERACAYIAGPAPNRWGFTVDGTDLFKSMSGFSVSAAGQCFADAQPISETQQIDGMDVQKDMQGKLRCHPLFFGITMGLLAEIINSRLFTTVRD SLGLTYDVSFELSLFDRLKLGWYVVSVTSTPGKVHKAVDACKSVLRGLHSNKVAQRELDRARRTLLMRHEAEIKSNAYWLGLLAHLQASSVPRKDVSCIK DLTSLYEAATIEDIYLAYEQLKVDEDSLYSCIGVAGTQAGEEINAPLEVEETDDGLQGGIPVGRGLSTMTRPTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	0	1
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	2.44	0.9748
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Potri.012G056100 [exp]	4.00	0.9588
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	4.89	0.9507
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	5.19	0.9602	RSH1.2
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.015G093600 [exp]	5.65	0.9484
AT2G38330			MATE efflux family protein (.1...		Potri.016G126000 [exp]	6.32	0.9445
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.010G092900 [exp]	6.48	0.9366
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Potri.019G132800 [exp]	7.07	0.9161	Pt-STA1.1
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.001G249100 [exp]	7.34	0.9336
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	8.66	0.9543

Compare expression of checked genes

Potri.002G235700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.