Plant FIBer expression Database

Potri.002G235900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14200 96 / 7e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G146200
[exp]
920 / 0 AT4G14200 96 / 6e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021962
[exp]
158 / 2e-39 AT4G14200 79 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10041255
[exp]
136 / 2e-34 AT4G14200 76 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.002G235900.1 pacid=42777042 polypeptide=Potri.002G235900.1.p locus=Potri.002G235900 ID=Potri.002G235900.1.v4.1 annot-version=v4.1
ATGGATAGCCAAGACCCCAGAAAGAATCATACACATACACCAGGGCATGGGAGTCATGGAGTTCATGTGTGTCACAGATGTGGGTGGCCCTTTCCGAAAC
CACATCCAAGTGCAAGATGCAAGCGTGCACACAATAAGATATGTGGAACTCTTGAAGGATACAAGGTTGTTGACTCTGAGGAGACTTCCCTCTCGGCTCT
TTCTGATGATGACAATGTTTCTGATGAAGAACCTGAAACCCCTAGTCCAAAAGGTTTGGAGAGAAGTAGTAACGAGAAGGGTAGTGGCGGAGTAGGGAAC
ATATCAAATAGATCAGAAGACGAGGTCTTTAAGGATGCTGTTGCGGAATTTCCTGAAAGTGGATACAGTTCGGTGACGGGAGAGCATACTAGGGATGTTA
AAGAACAGGAAATTGGCCTGGAGTTCAATAAAGCCACTGCTCAAACATCCAAGGATGGTTCGATTAATGTTACCGGCCCACCTCCTAGCAATTCAGCCGA
CCCCATCCAAATGCAAAGTACTGAAGCTCCAGTATGCAATCTGTCTGGAAAAGCACAAGAGTCCCTAGATCATGACTCAAATTCTACCATTGGCTTCATG
ACTAGACCTTTAATAGATTGCAGAGATGAAGAATCTGGCTTTGAGTATAGCCATAATAATGAAGGTTCAGCATGTGACTCAATCCCCATCAAACTTGAAA
CACAAACAGATGCATCACAAGAGAATAAGAAGATTGGTGCTGGAAAGGATTTGTCAGAGTCTGATGCAAAAGGATATGAAGGAACTAAATTTGATGCAGG
GGAAGCATCTGAGATGGTATCCAAGTTGCAGAAGATGGAGGATTTAACTTCAGAGCCTGTGCCTACTGCAGAATCCCTTAAATTGAAGGAAGGCCATGCA
GATGTTTTAGCCTCTGGAATGTCTTTAAATGATCTCTCCTCTGAAGTTAAATCGGATGAACCTGTTGATTCTTCTTTTGATGCTGCTCAGACCAAGGGGG
GTGGTGTTCAAGAAATGGACTTGACTGATTATGTCAATTCAACAGACAGCTATGATAATAAGGGAGAAGGGGATGAAAATGTACATGTGCTTATAGTTCC
CCATGACTTTCCTGTGGTAGCCGATGCTGAGAACATGGTTAAAGGTTTTAAAGACCATGAAGGAGGGAAATTACCCCAACTTATAAATGTGGATTCATCT
GAAGTATTTAATAATGTTAAGGATTCTGGCACTAAGGACAATCCTTCTGGTTTTAATTCAAGGCCATTGATCAAGGACACCAAAGTCTCTACATCAGATT
TGCATGTTTTGGATGATAATGTTGAACCCAGAGGTGTGGCCAGCCAGCTTATTGTTGAAGAATTGCCTGATGAAGCAGAAGATGATGTGCCCCTTAAATC
AGAAGTTGGTGTAACAGATGTTGTGGTAGGTGACCTGGAGAAGAGCATTTCTGTTCAATCTCCCGAAGAAGTACCTCGTGATCATTGTGAAACTTCATCT
CTGACGAGTTATCTAGAGCACACTACAAACGCCATATCTGTTACTAACACCCTGGTAGTGCCAATAGATGCTGAAGTCAGGCAGACAAACTTAGATGATA
CTGGTAATCATGATAAAGATAAAATTGAAAGTTCCGAAATAGCTGTAAATGACATAAACAAAAGAAATGCAGTGGAGAATTGTGCAGAAAACAGAATACC
AACTTCTGGACATGCTAGTATTCCCGCCGAACAAGTTGATCGAAGGAACAGCATACTTGGAGATGTCAATGCTGATGCTCATGAAGAGGGTAAAATAGAA
AGATGCAATGTGTCTAAAATTGAAACTGAGGGTGATTCTGTACCTGGATTGGGGGAGGAAAATCTCCTGAGGGAGCCAAAAGCAACACCTGAATCTGCTG
CCAATGTTGAATACCATTTTACCTCAGAGAATGAAATTAATGTGTGTGGGGGTAAGCTCTCAGAACATCAACACATAGATTTAGGTAGAGTGTTGGAGCT
TCAAGATAGCAAAAAGGAACCTGAAAGCAATAGTATGGCCAATCTACAAGAGCATGATGGCAAAGTTAGTACATTTGCTGAATCAGATGGCCGTGGAGAT
GTTGAGGTATTATGGGAGTCTTCTGAAGACAAAATGGTGAGAGAGCCTCCTGTTTCTCCTCCAGAGATTACATCTTCCCTTCAAAACCCTTCCCCTATTG
CAGATAGTCATGCCAGAGATTTCCTTGCAGTTGCATCTGGGAACACATCTGACTTTTTGCCTGTTGAAGGTGATAATAACTTAGTTACACAACAGGTTGT
TGCATCTGCTACTGACTTTTCAGTTGATTCAAGTAGCCAAACTGATAGTTTGGAAGCTCATTGGGGTTCCGTTTCAGTGCTTTCCACCCAATCGGATATA
CCGACTATTCTTGATGCTGAGACTTTGCCATCAAATGGTTCCCAAGCATTATCAGAAGCAGAGAAAGCCACCTTGAAGATGCTGAGAGCTGCTTCTGAGA
CACAACATGCTGATAAATCAGATGTTTTTGAGGCCCCTTCTTTCATGACATTGGTTGAACCTACAGATGGGATTAACCAGAAAGCCGATGCATCTGAAGC
CCAGACAACACAGAACCCTCAACAGCCAAAAGCTGCTTCTGTACAAGCTGGTTGGTTTCCATCCATTACTAATGTTGTTAATGATTCTCCGGGGAGAAAG
AAGAATGAAGAGATTATGGCCAAGGTCACGAACTGGAGCACGGGGAAACAACACCCTCCCTTGAAGAGCCCACAACATGCTCCGAAAATCCTTTTGGGTA
AGGCAAACATGGAAACCAAATCCAAGTCTCCAGATGCTAAGGAAATCCCAGTTGACAAAGGTGACCCTGCAGCTAATAGTAATGGCACTTCACCTAAAAC
ATTGAGCCCGATTCTGGTTCCTCAAGAGCCTGTGGGTGAGCCTGTCAAGGATGAAGAGAAAACATGGAATCTTCCAGCAAGGCACCCTGCAGATATTAAG
AGTGAGAAGAAAAAAGTCAAGGGAAGACCACACTGGGCACAATTTGTTTGCTGCTCATCTGTAAACGAGGACAGTTAG
AA sequence
>Potri.002G235900.1 pacid=42777042 polypeptide=Potri.002G235900.1.p locus=Potri.002G235900 ID=Potri.002G235900.1.v4.1 annot-version=v4.1
MDSQDPRKNHTHTPGHGSHGVHVCHRCGWPFPKPHPSARCKRAHNKICGTLEGYKVVDSEETSLSALSDDDNVSDEEPETPSPKGLERSSNEKGSGGVGN
ISNRSEDEVFKDAVAEFPESGYSSVTGEHTRDVKEQEIGLEFNKATAQTSKDGSINVTGPPPSNSADPIQMQSTEAPVCNLSGKAQESLDHDSNSTIGFM
TRPLIDCRDEESGFEYSHNNEGSACDSIPIKLETQTDASQENKKIGAGKDLSESDAKGYEGTKFDAGEASEMVSKLQKMEDLTSEPVPTAESLKLKEGHA
DVLASGMSLNDLSSEVKSDEPVDSSFDAAQTKGGGVQEMDLTDYVNSTDSYDNKGEGDENVHVLIVPHDFPVVADAENMVKGFKDHEGGKLPQLINVDSS
EVFNNVKDSGTKDNPSGFNSRPLIKDTKVSTSDLHVLDDNVEPRGVASQLIVEELPDEAEDDVPLKSEVGVTDVVVGDLEKSISVQSPEEVPRDHCETSS
LTSYLEHTTNAISVTNTLVVPIDAEVRQTNLDDTGNHDKDKIESSEIAVNDINKRNAVENCAENRIPTSGHASIPAEQVDRRNSILGDVNADAHEEGKIE
RCNVSKIETEGDSVPGLGEENLLREPKATPESAANVEYHFTSENEINVCGGKLSEHQHIDLGRVLELQDSKKEPESNSMANLQEHDGKVSTFAESDGRGD
VEVLWESSEDKMVREPPVSPPEITSSLQNPSPIADSHARDFLAVASGNTSDFLPVEGDNNLVTQQVVASATDFSVDSSSQTDSLEAHWGSVSVLSTQSDI
PTILDAETLPSNGSQALSEAEKATLKMLRAASETQHADKSDVFEAPSFMTLVEPTDGINQKADASEAQTTQNPQQPKAASVQAGWFPSITNVVNDSPGRK
KNEEIMAKVTNWSTGKQHPPLKSPQHAPKILLGKANMETKSKSPDAKEIPVDKGDPAANSNGTSPKTLSPILVPQEPVGEPVKDEEKTWNLPARHPADIK
SEKKKVKGRPHWAQFVCCSSVNEDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14200 Pentatricopeptide repeat (PPR)... Potri.002G235900
[exp]
0 1
AT1G78600 CO BBX22, DBB3, ST... SALT TOLERANCE HOMOLOG 3, DOUB... Potri.011G105400
[exp]
1.41 0.8660
AT3G55270 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED ... Potri.010G210900
[exp]
1.73 0.9010
AT2G39950 unknown protein Potri.010G192800
[exp]
9.89 0.8452
AT1G10940 ASK1, SNRK2-4, ... SNF1-related protein kinase 2.... Potri.004G138300
[exp]
10.67 0.8603 SPK.2
AT5G58900 MYB Homeodomain-like transcription... Potri.001G248800
[exp]
14.96 0.8230
AT4G34890 ATXDH1 xanthine dehydrogenase 1 (.1) Potri.009G054600
[exp]
16.27 0.8575
AT1G22770 FB, GI gigantea protein (GI) (.1) Potri.005G196700
[exp]
19.79 0.8251 GI.1
AT5G36930 Disease resistance protein (TI... Potri.008G220200
[exp]
22.13 0.8521
AT3G13040 GARP myb-like HTH transcriptional r... Potri.007G003200
[exp]
23.68 0.8228
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Potri.006G127500
[exp]
24.14 0.8138

Potri.002G235900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.