Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23740 164 / 9e-43 unknown protein AT4G14120 64 / 1e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G236300.1 pacid=42778401 polypeptide=Potri.002G236300.1.p locus=Potri.002G236300 ID=Potri.002G236300.1.v4.1 annot-version=v4.1 ATGACAGAAGAAGAAGCTCCAAAGCTCATCCCCAACAAACGAAGTGACCCATCCCCTCCCTACATGGGGATAGGGATCTGCACTGACAGTAAACACCACG GGGTACTGTCGCAATCGCTTAACAAGAGGTCCCGAAGGACAAGAAATGGTGATTCTGCCGATACAGATGACTGGTCTTCCATTTTAATGAAAGATCTTCG CACCAGAAGGGTTTTCTCTCCAGTCCCAAGCGCTGTTGACAAACAAGGCATAAAGGGATCTGATAAGGAGGAAAATCAGGGGATTCTTTGTGATTCCCAG AATTTCCCAAGTACAAAACTTGCTGATTCTTTGGACGTGAAAGAAGACGTGGGGTATTCCTGCAAAGAGCAGATCATGGAGGATGACATCAATATTTCCA ATGGTGAGATTTTGAATGAAGAATGTATGAAAGGAACACCTCCTGATGCAGAGATGTTGAGTTATGGATTCGCTGAAAATGAAGGCAGAAATTCGAAGGA AACGGGACAAGCTTCTCAGGAGCTATCTATCGGAAGGGTGCTGAAAAGGGGGTCTGAGAAGAAGGACATTGACAGTAATTCTGCAACCAAAGTTGTCCAT AGGCCGTGGTCTCGGCTTAAGGTATTCAAGGCCCCAGGTTCAATAAGCTATAGAAGATTGCTTCCATATCTGATGGATATGGTCAAAAATGACTCTTGTG CTCCCAAGAAAACTAACTGCCCAAACACAGAGGGTGGTCCAGGAATATCGATGCATCACTCCCAGAGAGACAGTTCCTTGGAGGGTAATGCTGGTGATTC TGATACTCAGCCACATTGTGTACAATTTCTTGTCAATGGCTCATCTGGTGCCAGTGACTTAAATGTAACATCTCTTGAACAACTTAGTTCAGAGAAGGAT TGTTGCGTGAGTTTTAATAGCCACAACTCAGTGAACGATGATTGTTGTTCGAAGCCTCTTGTGAATGAAGAGAACGGAAAAATTGAGATAGGGGCATCTT TAACTGTGCACGCTTCTTGTTTTGTTGGTTGTTCTACTGATACAAATCCTGTTAATAGCGAAGAGATGGAAAGAACTGATGTTGGGATTTCTTGTTATTA TCAAGATGTTATGGATGCAAGGCAGAGCTTCTCGTTGATCAAGGAGAAGCACCAATTAAATGAAAGTGATGAAGATGGTCGACATTTTGATCATACTACA GCATATGACACTGTAGGTGTAGAAGAAATTGACACGATGCATCCTTCTGAAGCTGTTGGTCTAAATCATATAGGCCCTGATTTGTTCGATACTGAAAGAA TCAGCAGGACTTGTCACACGAAGAAGGAAGTTGATCTTAAAGGTGGTGTTTTGGAAAAAAGTGATGACTCAAATGAAGAGTCTATCCAGCTGACCCCAGT CACTCCACGGGATAGTGATATTTTTGATAAACCAGAGGCCTACACCAATGTGAATAGCAGAGTTAAATGTGTCTCAAAGAGAGTTGATCGAGTTATTGGG AGGCCATTGGATGAAACAACCCCCAGAAGCAATAGATTTGCTGGTGATAACATAATGGACTCCAAGATTTCTAAAAGAAAATTGGGTTTAAATCCATGCT CACAGCTGAAGCTATTTAAGACTCCAAGCTCATTCAGCTATAGAAGATTGCTTCCATATCTGATGGATATCACCAAAGACAGTTCTGGTGCTTTGGGAAA TGTTCATTATCCAAAACTTGAGAAGCGCTCAGAAGAATATCCAGTCTCTCTACTCTCACAACTATCAACTTCTTACCGTAATGAGAATCCCATTGAGAAG TCTGATGGAGAATGTTATCTTGTGAAATGTGATTCTGGCCCTTCACGTACTGGGCAAATCGCTGTGACAGCTACCAATGATGCATATAATGATGCTCAAC CAGATTCAACATCTGCTGAACACAACTCCAAAACTCCAGTATCACTTGGCTCACCAGAAAAGGAGATTACAGCAGATGTTATATCAGATAAAGATAAGCA GTTAGAGGCTGTCCTTGATATTGTGCCTTCAGTTCATGGAAGCTGCTCACCACCTATGTCATTATGTTTTGTCTCTGAATGTAGCCTGAACTCAGGGGCA CCTGAATTACCTGTCGTTAATGAAGGGGGCTGTATGGCATCAGTATTGAAACTAACTAATTGTGCAAAGCCAGAGGAAGCAGACTCATCCCAAGTTGAAG TCTCCGATCCCTCGGGAATTCCTCCTCTTGGACCCAAGAGGAGTATTCTTAAGAGAAATCCAAGAGGATGCAGAGGAAGTTGCGAATGCTTAAACTGTGC TTCCTTTCGCCTCCATGCAGAAAGGGCATTTGAGTTCTCAAAAAATCAGATGCAAGATGCTGAAGAAGTGGCCTATGATTTGATCAATGAACTCTCTCAC CTGAGGACTTTACTGGAGAAATCAACATCTGGTTCCGATGATCACCTTGCTGTCTGTACTGATCAGGTGAAAGAAGCCTGCAGGAAAGCATCTGAAGCAG AAGAACTAGCAAAAACACGGCTTAAAGGAATGAATTATGATCTCAGCATCCACTGCAGAATCACATGTGGAGAGCGACCACGAGTTAGTTTCGCAAATGG AGTGGACGAAAGAGTCATTCCACATGCAGACGTTTGA
AA sequence Show only first row Show all	>Potri.002G236300.1 pacid=42778401 polypeptide=Potri.002G236300.1.p locus=Potri.002G236300 ID=Potri.002G236300.1.v4.1 annot-version=v4.1 MTEEEAPKLIPNKRSDPSPPYMGIGICTDSKHHGVLSQSLNKRSRRTRNGDSADTDDWSSILMKDLRTRRVFSPVPSAVDKQGIKGSDKEENQGILCDSQ NFPSTKLADSLDVKEDVGYSCKEQIMEDDINISNGEILNEECMKGTPPDAEMLSYGFAENEGRNSKETGQASQELSIGRVLKRGSEKKDIDSNSATKVVH RPWSRLKVFKAPGSISYRRLLPYLMDMVKNDSCAPKKTNCPNTEGGPGISMHHSQRDSSLEGNAGDSDTQPHCVQFLVNGSSGASDLNVTSLEQLSSEKD CCVSFNSHNSVNDDCCSKPLVNEENGKIEIGASLTVHASCFVGCSTDTNPVNSEEMERTDVGISCYYQDVMDARQSFSLIKEKHQLNESDEDGRHFDHTT AYDTVGVEEIDTMHPSEAVGLNHIGPDLFDTERISRTCHTKKEVDLKGGVLEKSDDSNEESIQLTPVTPRDSDIFDKPEAYTNVNSRVKCVSKRVDRVIG RPLDETTPRSNRFAGDNIMDSKISKRKLGLNPCSQLKLFKTPSSFSYRRLLPYLMDITKDSSGALGNVHYPKLEKRSEEYPVSLLSQLSTSYRNENPIEK SDGECYLVKCDSGPSRTGQIAVTATNDAYNDAQPDSTSAEHNSKTPVSLGSPEKEITADVISDKDKQLEAVLDIVPSVHGSCSPPMSLCFVSECSLNSGA PELPVVNEGGCMASVLKLTNCAKPEEADSSQVEVSDPSGIPPLGPKRSILKRNPRGCRGSCECLNCASFRLHAERAFEFSKNQMQDAEEVAYDLINELSH LRTLLEKSTSGSDDHLAVCTDQVKEACRKASEAEELAKTRLKGMNYDLSIHCRITCGERPRVSFANGVDERVIPHADV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23740			unknown protein		Potri.002G236300 [exp]	0	1
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Potri.007G108200 [exp]	1.73	0.9238
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	2.64	0.9419
AT3G42660			transducin family protein / WD...		Potri.012G065200 [exp]	3.74	0.9254
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.001G074000 [exp]	7.74	0.9210
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	10.72	0.9203
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.005G087300 [exp]	12.00	0.8738
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	12.24	0.9168
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.017G063900 [exp]	12.24	0.8893
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	12.96	0.9045	Pt-UBP21.2
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	14.07	0.8875

Compare expression of checked genes

Potri.002G236300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.