Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15550 437 / 2e-150 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT1G05560 430 / 7e-148 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT1G05530 415 / 4e-142 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT4G14090 415 / 4e-142 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 308 / 3e-100 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 305 / 3e-99 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 293 / 3e-94 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 293 / 7e-94 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 290 / 1e-92 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT1G24100 279 / 5e-89 UGT74B1 UDP-glucosyl transferase 74B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G236400 [exp] 904 / 0 AT1G05560 442 / 1e-152 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Potri.014G146000 [exp] 789 / 0 AT4G15550 429 / 2e-147 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.016G052500 [exp] 559 / 0 AT4G15550 419 / 3e-143 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.006G055600 [exp] 554 / 0 AT4G15550 442 / 2e-152 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.004G083700 [exp] 440 / 4e-151 AT4G14090 374 / 3e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G101800 [exp] 413 / 2e-141 AT4G14090 369 / 3e-124 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G140500 [exp] 318 / 5e-104 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.009G095500 [exp] 317 / 3e-103 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.017G032300 [exp] 314 / 2e-102 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021610 [exp] 433 / 6e-149 AT1G05560 372 / 6e-125 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Lus10015515 [exp] 431 / 2e-147 AT4G15550 379 / 3e-127 indole-3-acetate beta-D-glucosyltransferase (.1) Lus10019989 [exp] 422 / 5e-144 AT4G15550 379 / 5e-127 indole-3-acetate beta-D-glucosyltransferase (.1) Lus10008742 [exp] 315 / 5e-103 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006352 [exp] 299 / 7e-97 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 293 / 2e-94 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 290 / 3e-93 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10020556 [exp] 287 / 5e-92 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006353 [exp] 282 / 4e-90 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014105 [exp] 276 / 1e-87 AT4G15480 467 / 3e-162 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.002G236500.2 pacid=42778436 polypeptide=Potri.002G236500.2.p locus=Potri.002G236500 ID=Potri.002G236500.2.v4.1 annot-version=v4.1 ATGGCGGTGCAACCTCACTTCCTTCTGTTAACCTATCCCGCACAAGGCCACATAAATCCTGCCCTCCAATTCGCCAAGGGTCTGACACGTATTGGTGCTC TCGTCACCCTTGTTACCTCTCTCTCTGCCGGCCGCCGCATGTCCAAAACTTTGTTTCCTGACGGTTTGTCATTCGTTACCTTTTCAGATGGATATGACGA CGGGCTTAAACCTGAAGATGACAGAGAACATTTCAAGTCTGAGCTCAAACGTCGAGGCTCACAGACTCTCAATGAGCTTATCGTAGATAGTGCAAAAGAA GGAAAGCCCGTCACTTGTTTGGTTTACACGATGTTTCTACATTGGGCAGCTGAGGTGGCACGCGCACAGCATCTCCCAGCAGCACTTCTTTGGATTCAGC TTGCAACTGTCTTTGACATCTATTACTATTACTTCAATGGTTATGGTGATATCTTCAATAATTGCAAGGACACTTCGTATGCTATTGAATTACCAGGGCT CCCACCACTTGCTAGCCGTGACCTTCCCTCGTTGGTACTTCCTTCAAATACTTATGCTTGGGCACTCCAGATGTTTCAAGAGCAGCTGGAGCAGCTCAGC CAAGAAGCCAACCCAAAAGTGCTTGTCAACTCTTTCGATGCATTGGAATTGGGAGCTATGAATGCCACTGAAAAGTTCAACTTGACTGGAATCGGGCCAT TGATCCCATCTGCTTTCTTGGATGGAAAAGATCCGTTGGATAAATCCTTTGGAGGGGATATTTTCCACGGCTCCGAGGATTACACTGAATGGTTGAACTC AAAGACTAAATCATCAGTGGTTTATGTATCTTTTGGGAGCATTTTGGTGTTATCGAAGCGACAAATGGAGGAGATTGCTCGTGGATTGGTAGATAGTGAT CTTCCATTCCTGTGGGTCATAAGGGATGAACAGAATAAGAACGAAGTGAAAGAAGAAGAAGAAGAGGATCATCTGAGGGCCTGTAGAGAGGCGATATTGG AAAGGCAAGGGATGATAGTGCCATGGTGTTGTCAAGTGGGGGTTTTGTCCCATCCTTCGATAGGATGTTTTGTGACACACTGTGGGTGGAACTCAACTCT GGAGAGCTTGGTTTGTGAGGTTCCAGTTGTGGCATTTCCTCACTGGACAGATCAAGGAACAAATGCCAAGCTGATTGCAGACGTGTGGAAGACAGGAGTG AGGGTGGTGGCTAACGAAGAAGGGATAGTCGAAGGCGATGAGATTAAGAGGTGCTTGGATCTGGTTATGGCACATGGAAAGACGGGAGAAGACATCAGAA AGAACGCCAAGAAATGGAAAGATCTAGCAAGAGATGCTGTCAAGGAAGGAGGTTCCTCGGATAAGAATCTAAAGGCTTTTGTGCAGGATGTTGGCGAGGG CTGTTTCTAG
AA sequence Show only first row Show all	>Potri.002G236500.2 pacid=42778436 polypeptide=Potri.002G236500.2.p locus=Potri.002G236500 ID=Potri.002G236500.2.v4.1 annot-version=v4.1 MAVQPHFLLLTYPAQGHINPALQFAKGLTRIGALVTLVTSLSAGRRMSKTLFPDGLSFVTFSDGYDDGLKPEDDREHFKSELKRRGSQTLNELIVDSAKE GKPVTCLVYTMFLHWAAEVARAQHLPAALLWIQLATVFDIYYYYFNGYGDIFNNCKDTSYAIELPGLPPLASRDLPSLVLPSNTYAWALQMFQEQLEQLS QEANPKVLVNSFDALELGAMNATEKFNLTGIGPLIPSAFLDGKDPLDKSFGGDIFHGSEDYTEWLNSKTKSSVVYVSFGSILVLSKRQMEEIARGLVDSD LPFLWVIRDEQNKNEVKEEEEEDHLRACREAILERQGMIVPWCCQVGVLSHPSIGCFVTHCGWNSTLESLVCEVPVVAFPHWTDQGTNAKLIADVWKTGV RVVANEEGIVEGDEIKRCLDLVMAHGKTGEDIRKNAKKWKDLARDAVKEGGSSDKNLKAFVQDVGEGCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.002G236500 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	1.41	0.9381
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Potri.002G236400 [exp]	1.41	0.9581	IAGLU.2
					Potri.001G077900 [exp]	5.19	0.9148
AT1G18980			RmlC-like cupins superfamily p...		Potri.015G068200 [exp]	5.29	0.9306
AT3G08870			Concanavalin A-like lectin pro...		Potri.006G103200 [exp]	5.74	0.9319
AT1G66920			Protein kinase superfamily pro...		Potri.017G116955 [exp]	8.66	0.9254
AT4G25160			U-box domain-containing protei...		Potri.004G233000 [exp]	9.53	0.9172
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.005G180200 [exp]	10.58	0.9168	Pt-ATAF1.1
AT4G33920			Protein phosphatase 2C family ...		Potri.007G051900 [exp]	13.03	0.9141
AT1G01490			Heavy metal transport/detoxifi...		Potri.004G073000 [exp]	14.31	0.8788

Compare expression of checked genes

Potri.002G236500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.