Plant FIBer expression Database

Potri.002G236600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12850 463 / 1e-162 Phosphoglycerate mutase family protein (.1)
AT3G26780 451 / 9e-158 MEF14 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G145900
[exp]
619 / 0 AT3G26780 452 / 3e-158 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035155
[exp]
477 / 1e-167 AT3G26780 491 / 2e-173 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1)
Lus10031987
[exp]
474 / 2e-166 AT3G26780 498 / 3e-176 mitochondrial editing factor 14, Phosphoglycerate mutase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0071 His_phosphatase PF00300 His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence
>Potri.002G236600.1 pacid=42778285 polypeptide=Potri.002G236600.1.p locus=Potri.002G236600 ID=Potri.002G236600.1.v4.1 annot-version=v4.1
ATGGGTTCCACCCAGTCCACACATGCAACTCAAGATGATGACGAGGAAGAAGAAGCAAGCGAAGAAGAAGAAGAAGAGAAAGACGAGGAGGACGAAGAAG
AAGAGCTGGAACAGCCTAACGATAGAGGAATCATCGAAAACAACAATAATTTACACAACAAGGTTCTACAACAAGAGCCAGAGATGCTGCCCTGTTACGC
ATCAGCATCGCCTCTCTCCCCTCAACTCTCATCTCTAGGCACCCCAAAGCTCGGTCCTTCTATCAAGGTGTGGGACCCTTACAACGTCCTCGCGCCGCTC
CCTCCCCCGCCCCCGCCTCCTTTCTCCTCCGATGACGAGGTTGGTGTTTTGGAGGTGTTTTTGATCAGTCATGGAGAGTGCGAGCTCGATCTGAGGCCTG
ATTTAGTCGGTGGAAGGTGCCACGTGGCTGAATTGACTCCCAAAGGGCAGCGACAAGCCAGGGCTCTTGCTGTCTTCTTCAACTCTCAAAGGGTCAGCTT
CCATTCCGTTTATTCATCGCCCTTGAATCGTGCTAGATCAATGGCTGTCTCCATCTGCCAGGAAATGAATTTTGCCGAGGAGCAAATACGACCAGCAGAT
GCACTAATGGAGATGAGTATGGGGCTTTGGGAGGGTTGCTCCCGCTCAGAAATATATACACCTGAAGTTCAGAGCCTGCTCGAAAATTTTCGGCCTGACT
TCTGTGCACCATCTGGAGAATCACTTAGGCAAGTCGAATTTAGGATGGTTCAGTTCCTAAATGGAACAGTCCTGGGACTGCCTGAAAAGCTGAGATCAGA
TTTGTTGATGCACCATCAAACTGAGAGCCAAGGGTTCTCTCATGACAGAGATGGGCCTCTTCTACCACTGCCTTCTCATTGGGATATGCTTCATAGGCAC
CGACAGGGCCTCACAAGGAAAAAGTCTGGTAAGAGTAGGCTACAACATGTGACTTCTACAGGCAATCACGAGGGTGAGGATGAGGTCTCTCTTAGGGAAG
CCAGCCACCAACATTTGCTCCCTGATTTGAATAACAGGAACTCATCCTCCGCAGTCTCTTCATGCGTGGGCGTTTTCACGCATTCAATTCCTATCAAGTG
TCTGCTCACAGGCCTCCTGGGGTGCAGCCCAGTAATGATGCACAAGATCTGCATAGAAGATTCTTCAGTGACTGTGTTGCAGCACTCTTGGAAAACAGGT
TGGCAGATTAAAGGCCTGAATGATACTGCACATCTGAGACTTCTCTAG
AA sequence
>Potri.002G236600.1 pacid=42778285 polypeptide=Potri.002G236600.1.p locus=Potri.002G236600 ID=Potri.002G236600.1.v4.1 annot-version=v4.1
MGSTQSTHATQDDDEEEEASEEEEEEKDEEDEEEELEQPNDRGIIENNNNLHNKVLQQEPEMLPCYASASPLSPQLSSLGTPKLGPSIKVWDPYNVLAPL
PPPPPPPFSSDDEVGVLEVFLISHGECELDLRPDLVGGRCHVAELTPKGQRQARALAVFFNSQRVSFHSVYSSPLNRARSMAVSICQEMNFAEEQIRPAD
ALMEMSMGLWEGCSRSEIYTPEVQSLLENFRPDFCAPSGESLRQVEFRMVQFLNGTVLGLPEKLRSDLLMHHQTESQGFSHDRDGPLLPLPSHWDMLHRH
RQGLTRKKSGKSRLQHVTSTGNHEGEDEVSLREASHQHLLPDLNNRNSSSAVSSCVGVFTHSIPIKCLLTGLLGCSPVMMHKICIEDSSVTVLQHSWKTG
WQIKGLNDTAHLRLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12850 Phosphoglycerate mutase family... Potri.002G236600
[exp]
0 1
AT4G17720 RNA-binding (RRM/RBD/RNP motif... Potri.003G095400
[exp]
7.74 0.8903
AT1G04430 S-adenosyl-L-methionine-depend... Potri.002G036732
[exp]
23.62 0.8814
AT5G35160 Endomembrane protein 70 protei... Potri.006G189300
[exp]
26.26 0.8715
AT1G64650 Major facilitator superfamily ... Potri.003G145600
[exp]
34.52 0.8719
AT3G43190 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE S... Potri.018G063500
[exp]
41.91 0.8659 PtrSuSY1,Pt-SUS1.2
AT1G62020 Coatomer, alpha subunit (.1) Potri.012G074800
[exp]
50.67 0.8196
AT2G45060 Uncharacterised conserved prot... Potri.002G142900
[exp]
51.14 0.8611
AT5G42660 Protein of unknown function (D... Potri.002G149900
[exp]
60.62 0.7892
AT3G05520 Subunits of heterodimeric acti... Potri.013G017000
[exp]
68.64 0.8564
AT5G51430 EYE EMBRYO YELLOW, conserved oligo... Potri.003G109100
[exp]
68.66 0.8432

Potri.002G236600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.