Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02020 846 / 0 AK3 aspartate kinase 3 (.1) AT5G14060 838 / 0 CARAB-AK-LYS Aspartate kinase family protein (.1.2) AT5G13280 825 / 0 AK1, AK-LYS1 aspartate kinase 1 (.1) AT4G19710 170 / 8e-45 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2) AT1G31230 168 / 3e-44 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145700 [exp] 989 / 0 AT5G14060 805 / 0.0 Aspartate kinase family protein (.1.2) Potri.013G099500 [exp] 179 / 5e-48 AT4G19710 1425 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.019G071700 [exp] 173 / 6e-46 AT4G19710 1470 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.004G180600 [exp] 85 / 2e-20 AT3G02020 71 / 2e-16 aspartate kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012568 [exp] 892 / 0 AT5G14060 820 / 0.0 Aspartate kinase family protein (.1.2) Lus10041523 [exp] 886 / 0 AT5G14060 824 / 0.0 Aspartate kinase family protein (.1.2) Lus10030339 [exp] 168 / 4e-44 AT4G19710 1415 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10041071 [exp] 154 / 2e-39 AT4G19710 1373 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [poplar] [flax] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Potri.002G236800.3 pacid=42778543 polypeptide=Potri.002G236800.3.p locus=Potri.002G236800 ID=Potri.002G236800.3.v4.1 annot-version=v4.1 ATGGCAAACGCATTGCAATTTTCGGCGACCGTACAAGCTGCCTCCCCTGTTTTCTCCAAGAGGATGCATGGCCAATCTTTACGGCACAGGCCGTCGCCGC CGCTTAATTATAATTTAGTGGCTACAAGTTTGGTACTGTCAAAAAGAAGTCGTAGAGCCTTTAAAGTGAGCTGTGAGGCAGCCAGTGTTGATCTACTTGA AACGAACAAAATCGATAATGAAGCCGAGAAGAAAATAACATGCGTAATGAAGTTCGGTGGTTCTTCGGTGGCGTCTGCCGAGAGAATGAGAGAAGTGGCT GAACTTATACTTAGCTTTCCAAATGAGAGCCCTGTCATTGTACTTTCTGCCATGGGAAAGACCACTAACAAACTTTTGCTGGCTGGAGAGAAGGCTGTTA GTTGCGGTGTTACTAATGTAGATAGTATTGAAGAGCTGAGTTTCATAAAGGAATTGCATAACCGGACCGTGAAGGAACTGGAAGTAGACGAGTCGGTTAT TGCAAAACACTTGGAGGAATTAGAGCAGCTGTTGAAGGGAATTGCTATGATGAAAGAGTTGACTCCACGCACTAGAGATTACCTTGTTTCTTTTGGGGAG TGCATGTCCACAAGGATTTTTGCTGCATATATGAATAAAATTGGTGCTAAAGCTCGCCAATATGATGCTTTCGAAATTGGTTTTATCACCACAGATGACT TCACAAATGCAGACATTCTTGAAGCAACTTATCCGGCTGTTGCAAAGAGTTTGCATGGAGACTGGATTAGTGATCCTGCAATTCCTATTGTTACCGGCTT CCTTGGAAAGGGATGGAGATCCTGTGCTATTACTACATTAGGTCGTGGTGGTAGTGATTTGACAGCCACAACCATTGGAAAAGCATTAGGTTTGAGTGAG ATTCAGGTGTGGAAGGATGTTGATGGTGTTTTGACATGTGATCCTAATATATATCCACATGCTGAACCTGTGCCATACTTGACATTTGATGAGGCAGCAG AACTAGCATATTTTGGCGCGCAGGTCTTGCATCCGCAATCCATGAGGCCTGCCAGGGAGGCTGATATTCCTGTTAGGGTTAAAAATTCTTACAATCCGAA TGCTCCTGGAACTCTTATCACCAGAGCACGAGATATGAGTAAGGCAGTACTAACTAGCATTGTTTTGAAACGGAATGTTACTATGTTGGATATTGCTAGC ACCCGCATGCTTGGCCAATTTGGTTTTCTTGCTAAGGTGTTTTCAACCTTTGAAGATTTGGGAATATCAGTGGATGTTGTAGCTACCAGCGAAGTCAGTA TCTCCTTGACACTCGATCCATCAAAGCTTTGGAGTAGAGAGCTGATTCAGCAGGCAAGCGAACTCGACCATGTTGTTGAGGAGCTTGAGAAAATTGCTGT AGTCAATCTCCTGCAGCGTAGATCAATAATCTCTCTCATTGGGAATGTCCAGAGGTCCTCTCTGATATTAGAGAAGGCCTTCCATGTTCTTCGTACTCTT GGAGTCAATGTTCAGATGATATCACAGGGTGCTTCGAAGGTTAATATCTCATTAATTGTGAATGACGATGAAGCAGAGCAGTGTGTCAAGAGTCTCCACA AAGCTTTCTTTGAAACTGACATCTCTGAATTAGAGTGGGAGTGTGTATCTGGTAATGGTTCTGCCTCAACATGA
AA sequence Show only first row Show all	>Potri.002G236800.3 pacid=42778543 polypeptide=Potri.002G236800.3.p locus=Potri.002G236800 ID=Potri.002G236800.3.v4.1 annot-version=v4.1 MANALQFSATVQAASPVFSKRMHGQSLRHRPSPPLNYNLVATSLVLSKRSRRAFKVSCEAASVDLLETNKIDNEAEKKITCVMKFGGSSVASAERMREVA ELILSFPNESPVIVLSAMGKTTNKLLLAGEKAVSCGVTNVDSIEELSFIKELHNRTVKELEVDESVIAKHLEELEQLLKGIAMMKELTPRTRDYLVSFGE CMSTRIFAAYMNKIGAKARQYDAFEIGFITTDDFTNADILEATYPAVAKSLHGDWISDPAIPIVTGFLGKGWRSCAITTLGRGGSDLTATTIGKALGLSE IQVWKDVDGVLTCDPNIYPHAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREADIPVRVKNSYNPNAPGTLITRARDMSKAVLTSIVLKRNVTMLDIAS TRMLGQFGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAVVNLLQRRSIISLIGNVQRSSLILEKAFHVLRTL GVNVQMISQGASKVNISLIVNDDEAEQCVKSLHKAFFETDISELEWECVSGNGSAST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02020		AK3	aspartate kinase 3 (.1)		Potri.002G236800 [exp]	0	1
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.001G436100 [exp]	1.41	0.7284	Pt-AERO1.1
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Potri.002G259000 [exp]	5.74	0.6907
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.005G226900 [exp]	7.93	0.6286
AT2G46230			PIN domain-like family protein...		Potri.014G092600 [exp]	13.78	0.6836
AT1G24267			Protein of unknown function (D...		Potri.003G169200 [exp]	22.22	0.6317
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.013G008900 [exp]	31.55	0.6871	Pt-LON_ARA_ARA.1
AT4G33070			Thiamine pyrophosphate depende...		Potri.016G120100 [exp]	32.24	0.6298	Pt-PDC1.5
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Potri.018G087900 [exp]	32.58	0.5883
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.001G303100 [exp]	34.98	0.6110
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.001G389300 [exp]	40.79	0.6538

Compare expression of checked genes

Potri.002G236800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.