Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02010 968 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 521 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 513 / 5e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 493 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 489 / 8e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 486 / 4e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 483 / 5e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 481 / 6e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G11290 477 / 7e-157 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 479 / 2e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155100 [exp] 566 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 547 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 530 / 1e-175 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 514 / 1e-168 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 496 / 5e-164 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 501 / 7e-163 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 494 / 1e-162 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 491 / 3e-162 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 491 / 2e-161 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035164 [exp] 1107 / 0 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 1094 / 0 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 523 / 2e-172 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 514 / 3e-169 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 500 / 1e-164 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 493 / 5e-162 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 487 / 2e-160 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 479 / 6e-158 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013578 [exp] 488 / 1e-157 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10024936 [exp] 477 / 7e-157 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.002G237100.1 pacid=42778137 polypeptide=Potri.002G237100.1.p locus=Potri.002G237100 ID=Potri.002G237100.1.v4.1 annot-version=v4.1 ATGAAAGTGAAAGCACCACCATTCAGGGCAAATCAACTCAAAACCCTACATGGAGCCTCTTCACGTCAAACTCTCCAGACCTGCATCGATGCCAGAATCG TTAAAACGGGTTTCGACCCCATCACGAGCCGCTTCAATTTCATGATCAAGGATCTTTCCGAAAGAGGGCAGTTATGTCAAGCACGCCAATTGCTTGATCA AATGCCTAACAGAAACTCATTCTCTATAGACATTATTATTTCTGGATACGTCAAATCGGGCAATCTTACAGTTGCTAGAAGAATTTTTGACGATACGGAC GAACGCACTGTAGTCGCATGGACAACTATGATTGGTGCGTATTCGAAGAGTAATCGTTTTGGAGATGCGTTTAAGCTTTTTGCCGAGATGCATAGGTCCG GTTCTCAGCCTGATTATGTCACCTATATAACTCTTTTAACTGGGTGCAATGACCTCGAAGTGGCCAAAGAATTATATCAGGCTCATGCCCAGATTGTCAA ACTTGGTCACCATCTGAACCATAGAGTTTGCAATACATTGCTTGATTCTTATTTTAAAACAGGTGGCCTAGATTCAGCTCGTCGGCTCTTTTTGGAAATG TGTGGATGGGATTCTGTTTCTTTTAATGTGATGATAACAGGGTATGCAAACAATGGGTTGAATGAAGAAGCGATTGAGCTTTTTGTGGAAATGCAAAATT TAGGTTTCAAGCCTTCCGATTTTACTTTTGCAGCAGTTATAAGTGCCAGTGTAGGGTTAGATGACACAGCATTTGGGCAACAAATCCATGGTTTTGTTGT GAAGACCAGTTTTATTAGGAATGTGTTTGTGGGGAATGCGTTCCTTGATTTTTACTCAAAACATGATTGTGTGAATGAAGTGAGGAAGCTTTTTAATGAG ATGCCGGAGTTGGATGGTGTTTCTTACAACGTGATCATCACAGCATATGCTTGGGTCGGAAAAGTAAAAGAATCAATTGATCTTTTTCAGGAACTTCAGT TTACAACTTTTGATCGCAAGAATTTCCCTTTTCCAACCATGTTAAGCATAGCTGCAAGTTCATTAGATTTGCAAATGGGTCGGCAACTTCATGCCCAGGT CGTTGTTTCAATGGCTGATCCAGATTTTCGTATTTCAAATTCTTTGGTTGACATGTATGCTAAGTGTGGCAAATTTGAGGAAGCTGACAGGATATTTTTG AGACTGAGCAGTAGAAGCACGGTTCCATGGACAGCCATGATTTCAGCTAATGTTCAGAGAGGACTCCATGAAAATGGCCTGAAACTGTTTTATGAGATGC GCAGAGCTAATGTAAGTGCTGACCAGGCTACTTTTGCCTGTGTCTTAAAAGCCTCTGCTAATCTGGCTTCAATTTTACTGGGGAAACAGTTACATTCTTG CGTAATCAGATCAGGTTTCATGAATGTTTATTCAGGATGTGCGCTGGTGGACATGTATGCAAACTGTGCCTCTATTAAAGATGCAATTAAAACTTTTGAA GAAATGTCAGAAAGGAACGTAGTTACTTGGAACGCTTTATTGTCGGCATATGCACAAAATGGAGATGGCAAGGGCACACTTAAATCTTTCGAAGAGATGA TTATGTCAGGTTATCAACCTGATTCAGTTAGCTTCCTGTGCATTTTAACTGCTTGCAGCCACTGCAGATTAGTTGAAGAAGGATTGAAATACTTCAATGA CATGAGTGGTGTCTATAATCTAGCTCCTAAGAGAGAACACTACACGGCCATGGTCGATGCATTGTGTCGGAGTGGACGATTTGATGAAGCAGAGAAGCTC ATGGGTCAGATGCCATTTGAACTGGATGAGATCGTGTGGACATCTGTTTTGAACTCGTGTAGGATTCATAAGAACTACGCGCTGGCTAGAAAAGCAGCTG GTCAACTTTTTAATATGAAGGTGCTTAGAGATGCTGCCCCTTATGTCACCATGTCCAATATCTTTGCAGAAGCTGGTCAATGGGACAGTGTAGTTAAAGT GAAGAAGGCAATGAGGGATCGAGGAGTCCGTAAGCTTCCCGCATATAGTTGGGTTGAAATTAAACATAAGGTCCATGTTTTTTCTGCAAATGATGACAAA CACCCACAGCAGTTGGAAATCCTACGAAAGATTGAAATGTTGGCAGAGCAAATGGAAAAGGAAGGGTACGATCCTGATATCAGTTGTGCCCACCAGAACG TGGATAAAGAAAGCAAAATTGACTCTCTTAAATATCACAGTGAACGCTTAGCAATAGCATTCGCACTAATCAATACTCCAGAGGGATCACCAATCCTAGT GATGAAGAACTTGCGAGCTTGTACAGACTGCCATGCTGCGATCAAGGTGATCTCAAAAATCGTTGGAAGGGAAATTACAGTCAGGGATTCAAACAGGTTC CATCATTTTAGAGATGGGTCTTGCTCCTGCGGGGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.002G237100.1 pacid=42778137 polypeptide=Potri.002G237100.1.p locus=Potri.002G237100 ID=Potri.002G237100.1.v4.1 annot-version=v4.1 MKVKAPPFRANQLKTLHGASSRQTLQTCIDARIVKTGFDPITSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTD ERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEM CGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNE MPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRISNSLVDMYAKCGKFEEADRIFL RLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCVIRSGFMNVYSGCALVDMYANCASIKDAIKTFE EMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKL MGQMPFELDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDK HPQQLEILRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKVISKIVGREITVRDSNRF HHFRDGSCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02010			Pentatricopeptide repeat (PPR)...		Potri.002G237100 [exp]	0	1
AT4G32610			copper ion binding (.1)		Potri.006G246300 [exp]	1.41	0.8101
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Potri.002G241100 [exp]	2.23	0.8145
AT1G11390			Protein kinase superfamily pro...		Potri.004G032800 [exp]	6.48	0.7125
AT3G22660			rRNA processing protein-relate...		Potri.015G131200 [exp]	6.70	0.7324
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Potri.003G194400 [exp]	15.42	0.7072
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.016G119700 [exp]	16.97	0.7132
AT1G11240			unknown protein		Potri.004G035200 [exp]	24.89	0.7129
AT2G37990			ribosome biogenesis regulatory...		Potri.005G231000 [exp]	24.97	0.6965
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.010G142400 [exp]	25.61	0.6503
AT3G59800			unknown protein		Potri.007G139900 [exp]	28.49	0.6644

Compare expression of checked genes

Potri.002G237100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.