Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02060 1270 / 0 DEAD/DEAH box helicase, putative (.1.2) AT2G01440 205 / 5e-55 DEAD/DEAH box RNA helicase family protein (.1) AT5G26742 50 / 6e-06 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT5G14610 50 / 7e-06 DEAD box RNA helicase family protein (.1.2) AT3G01540 47 / 4e-05 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G09720 47 / 4e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 47 / 7e-05 DEAD box RNA helicase family protein (.1) AT3G22330 45 / 0.0003 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145000 [exp] 1549 / 0 AT3G02060 1254 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Potri.010G112500 [exp] 206 / 4e-55 AT2G01440 1177 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G000500 [exp] 54 / 6e-07 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 53 / 9e-07 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 52 / 1e-06 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.019G130900 [exp] 50 / 7e-06 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 48 / 3e-05 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.013G158000 [exp] 47 / 6e-05 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G152400 [exp] 47 / 8e-05 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012587 [exp] 1217 / 0 AT3G02060 1231 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Lus10041506 [exp] 1211 / 0 AT3G02060 1230 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Lus10034589 [exp] 201 / 4e-56 AT2G01440 769 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Lus10001425 [exp] 52 / 2e-06 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001057 [exp] 51 / 3e-06 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10030075 [exp] 50 / 7e-06 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032135 [exp] 50 / 1e-05 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 50 / 1e-05 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001074 [exp] 49 / 2e-05 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032133 [exp] 47 / 6e-05 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0123 [poplar] [flax] HTH PF02559 [poplar] [flax] CarD_CdnL_TRCF CarD-like/TRCF domain CL0123 [poplar] [flax] PF03461 [poplar] [flax] TRCF TRCF domain
Representative CDS sequence Show only first row Show all	>Potri.002G237400.1 pacid=42777049 polypeptide=Potri.002G237400.1.p locus=Potri.002G237400 ID=Potri.002G237400.1.v4.1 annot-version=v4.1 ATGGCTTCTCTTGACATCTCCACACCTCTTATCTTCAAGCTCAACTCCTCTGCTAAGCCGCGGAAGCTTTTCTCTTTGAAGTATCCTTGTCGCCACAAGC ACAGACCATCGTTTTCCCTCACCAATGCCGCCCACACCCAAACGGCACTTCCCTTCTCCAGCCGTACCACCACCCCAAAATACAAGATTGAGTCGGAGCA GGACCCCATCTCCATCCTCAACGAGAGAATTCGGCGCCAACACCATGGGAAGAGAGAGGGCTCAAACTCGAAGCCCATAATGGACTCTGAGGAGGCTGAT CAGTACATACAGATGGTGAAAGAGCAGCAGCAGAGAGGATTGCAGAAGTTGAAAGGCGACAGGGTAGCAAAAGAAGGGGATGTTTTCAGTTACAAGGTGG ACCCTTATACGCTTAGTTCCGGGGATTATGTTGTGCATAAGAAGGTGGGAATTGGGAGGTTTGTTGGGATTAAGTTTGATATGTCAAAGGGTTCTTCCGA GGCTATTGAATATGTGTTCATTGAATATGCTGATGGGATGGCTAAGCTTCCTGTTAAGCAAGCTTCTCGCATGCTTTATCGATATAATCTCCCGAATGAT ACGAAAAAGCCTCGGACCTTGAGCAAATTGAGCGACAATGGTGCCTGGGAAAGGAGAAAGACGAAAGGAAAGGTTGCAATACAGAAAATGGTGGTTGACT TAATGGAGCTGTATTTACATAGGCTAAAACAAAGGAGACCTCCCTACCCAAAGACTCCTGCCATGGTTGACTTTTCTGCTCAGTTTCCTTACGAACCCAC ACCAGATCAGAAGCAGGCTTTCATTGACGTCATGAGGGATTTAACCGAGAGAGAAACTCCAATGGACCGATTAATTTGTGGAGATGTTGGGTTTGGTAAA ACAGAAGTTGCTTTACGTGCCATCTTTTGTGTTGTCTCAGCTGGAAAACAAGCTATGGTTTTAGCACCAACAATTGTTCTAGCCAGACAGCATTTTGACG TTATTTCAGAACGCTTTTCCAAGTATCCCCATATCAAGGTTGCGCTTCTGAGTCGGTTTCAGAGTAAAGCAGAGAAAGAGATGTACTTGGAAATGACTAA ACATGGTCATTTGGACATTATCGTGGGAACTCACTCACTTCTTGGAAGTCGTGTTGTGTATAACAATCTAGGTCTTCTTGTGGTGGATGAAGAACAGAGA TTTGGTGTCAAACAGAAGGAGAAAATCGCTTCATTCAAAACTTCAGTCGATGTTCTTACTCTCACTGCAACTCCTATACCTCGGACACTTTATTTAGCAT TGACTGGATTTCGGGATGCGAGTTTAATTTCAACTCCACCTCCAGAAAGAGTTCCTATAAAGACTCATCTGTCAGCATACAGTAAAGAGAGGCTAATATC AGCGATCAAATATGAGCTGGACCGTGGTGGTCAAGTATTTTATGTCTTGCCTCGTATTAAAGGGCTGGAAGAAGTGAAGGATTTCCTTGAACAATCATTT TCAAATGTTGAAATAGCTGTTGCACATGGGCAGCAATACTCAAAGCTGCTAGAGGACACCATGGAGCAATTCGCACAAGGTGAAATTAAGATTCTTATAT GCACAAATATAGTAGAAAGCGGGCTTGATATTCAAAATGCAAATACCATCATAATTCAGGATGTTCAACTATTTGGTCTAGCTCAATTGTATCAGTTGCG TGGAAGAGTGGGCAGGGCAGATAAGGAAGCTCATGCGCATTTATTTTACCCTGACAAGTCAATGTTAACTGATCAAGCGCTGGAGAGGCTAGCAGCTCTA GAAGAATGCCAAGAACTTGGCCGAGGTTTCCAACTTGCAGAGAGAGACATGGGTATAAGAGGCTTTGGTACCATCTTTGGTGAGCAACAGACCGGGGATG TTGGGAATGTTGGAATTGATTTCTTCTTTGAAATGCTTTTCGAAAGTTTGTCCAAGGTTGACGAGCACCGTGTAATTTCAGTTCCTTACCAGTCAGTACA GGTTGATTTAAATATAAACCCTCATCTCCCTTCTGACTACATAAATTCCCTGGAGAACCCCATGGAAATTATTAATGAAGCTGAGAAAGCTGCAGAGACA GATATTTGGAGTTTAATGCAATTTACAGAAAATTTGCGTTGCCAATATGGAAAAGAGCCTTGCTCTATGGAAATTCTATTGAAGAAGCTTTACATTAGGA GAATGGCAGCAGATATTGGGATAATGAGAATTTACGCATCTGGAAAGATGGTTGGCATGGAAACAAATATGAGTAAAAAGGTTTTTAAGCTGATGGCAGA TTCAATGTCATCTGATATCCACAGAAACTCTTTGGTTTTTGATGGAAACCAAATAAAGGCTGAACTTCTTCTGGAGCTACCGAGAGCGCAACTGCTAAAT TGGGTCTTTCAATGCATAGCAGAACTTCATGCTTGCCTGCCTGCCCTTATAAAATACTAG
AA sequence Show only first row Show all	>Potri.002G237400.1 pacid=42777049 polypeptide=Potri.002G237400.1.p locus=Potri.002G237400 ID=Potri.002G237400.1.v4.1 annot-version=v4.1 MASLDISTPLIFKLNSSAKPRKLFSLKYPCRHKHRPSFSLTNAAHTQTALPFSSRTTTPKYKIESEQDPISILNERIRRQHHGKREGSNSKPIMDSEEAD QYIQMVKEQQQRGLQKLKGDRVAKEGDVFSYKVDPYTLSSGDYVVHKKVGIGRFVGIKFDMSKGSSEAIEYVFIEYADGMAKLPVKQASRMLYRYNLPND TKKPRTLSKLSDNGAWERRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDLTERETPMDRLICGDVGFGK TEVALRAIFCVVSAGKQAMVLAPTIVLARQHFDVISERFSKYPHIKVALLSRFQSKAEKEMYLEMTKHGHLDIIVGTHSLLGSRVVYNNLGLLVVDEEQR FGVKQKEKIASFKTSVDVLTLTATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYSKERLISAIKYELDRGGQVFYVLPRIKGLEEVKDFLEQSF SNVEIAVAHGQQYSKLLEDTMEQFAQGEIKILICTNIVESGLDIQNANTIIIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAAL EECQELGRGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDFFFEMLFESLSKVDEHRVISVPYQSVQVDLNINPHLPSDYINSLENPMEIINEAEKAAET DIWSLMQFTENLRCQYGKEPCSMEILLKKLYIRRMAADIGIMRIYASGKMVGMETNMSKKVFKLMADSMSSDIHRNSLVFDGNQIKAELLLELPRAQLLN WVFQCIAELHACLPALIKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.002G237400 [exp]	0	1
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	3.00	0.9693
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.010G168800 [exp]	4.47	0.9640
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	7.34	0.9626
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117100 [exp]	9.94	0.9512
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	13.03	0.9548
AT3G22690			unknown protein		Potri.013G044700 [exp]	13.41	0.9561
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	19.26	0.9532
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.001G301000 [exp]	21.63	0.9534	NHD1.2
AT1G36320			unknown protein		Potri.002G091000 [exp]	22.80	0.9506
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	22.97	0.9523

Compare expression of checked genes

Potri.002G237400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.