Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26700 445 / 2e-156 Protein kinase superfamily protein (.1) AT1G30570 185 / 5e-52 HERK2 hercules receptor kinase 2 (.1) AT3G46290 183 / 3e-51 HERK1 hercules receptor kinase 1 (.1) AT5G38560 179 / 2e-50 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G26150 177 / 2e-49 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G17420 172 / 5e-49 GPK1 glyoxysomal protein kinase 1 (.1) AT3G04690 176 / 7e-49 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT1G70450 169 / 8e-49 Protein kinase superfamily protein (.1) AT3G59420 176 / 1e-48 ACR4 crinkly4 (.1) AT1G09440 171 / 1e-48 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G144800 [exp] 597 / 0 AT3G26700 439 / 3e-154 Protein kinase superfamily protein (.1) Potri.008G214200 [exp] 180 / 5e-52 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234200 [exp] 183 / 3e-51 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.010G001600 [exp] 178 / 3e-51 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G164700 [exp] 183 / 4e-51 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.007G027000 [exp] 179 / 2e-50 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G467000 [exp] 180 / 3e-50 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1) Potri.005G124400 [exp] 176 / 1e-49 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.011G000500 [exp] 171 / 1e-49 AT3G20530 481 / 2e-170 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041509 [exp] 462 / 3e-163 AT3G26700 469 / 4e-166 Protein kinase superfamily protein (.1) Lus10012585 [exp] 435 / 5e-153 AT3G26700 426 / 2e-149 Protein kinase superfamily protein (.1) Lus10002882 [exp] 281 / 5e-92 AT3G26700 323 / 3e-108 Protein kinase superfamily protein (.1) Lus10024020 [exp] 180 / 3e-51 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10022129 [exp] 181 / 7e-51 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10041734 [exp] 177 / 6e-50 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10038595 [exp] 172 / 8e-50 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028140 [exp] 177 / 4e-49 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10019237 [exp] 176 / 2e-48 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10014318 [exp] 167 / 2e-48 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G237600.1 pacid=42777172 polypeptide=Potri.002G237600.1.p locus=Potri.002G237600 ID=Potri.002G237600.1.v4.1 annot-version=v4.1 ATGTCAAGGACTCTTGCAGCCATACTGGGAGGTGCTGCAGGAGTCATGGCATTGGCGGGGGTAGTTATTTTTGTTCTTTGGTGCTTATATCACAAAAAGA CTGTGTCAAGAACTTCTGAGACAGGATCTTCTGAAACATCTATTCAAGTAGGAAGGCATGCAGGGATCGAGTTGTCATCACAAGAAGCAAGGCGTTTTGA GATGGAAGAATTGGGTCTGGCCACGAAAGGTTTTAGTGAGAAAAATTTGATCGGGTTAGGAAAATTTGGGGAGGTATACAAGGGTTTGCTTAATAATGGG ATGATTGTGGCCATCAAAAAGAGACCTGGAGCTCCTAGTCCGGAATTTGTTGATGAGGTGCGCTACCTGTCATCTATTCAGCATCGGAATCTTGTGACAC TTTTGGGCTACTGCCAGGAAAATAACTTGCAGTTTCTTGTATACGAGTATATCTCTAGTGGGAGTGTTTCCAATCATTTGTATGGAGTTGGTCAAACTTT GGAGGGGAAGCTAGAATTCAAGAATAGACTTCCAATCGCTCTTGGGGCTGCTAAAGGTTTGGCTCACCTTCACTCTCAAACTCCCCGTTTGTTGCACAAG AATTTCAAAACAGCCAATGTTCTCGTGGATGAAAATTTCATAGCTAAAGTTGCAGATGCAGGACTTCGTAATTTCCTGGGAAGAGTTGATATTGCAGGCC CATCTACACAAGTGACAGCAGATGAGATATTTCTTGCCCCGGAGGTGAGAGAGTTCAGACAATTTTCTGAAAAAAGTGATGTATTCAGTTTTGGTGTATT CCTTCTAGAGTTGCTAAGCGGCAAGGAAGCAACAGAACCATCTCCAGAGACGAGCCAAAATCTGGTCGAGTGGGTGCAAAATACTCAAGACTACACCAAT TTTTCCAGCATCGTCGACCACAGATTGGGGAGTAGCTTCACTGCAGAAGGCATGGAAGAGTTTATACAGTTGATGCTTCAATGTGTGGAACCTTCAAGTG ATAGGAGACCACTAATGAGTTATGTGGTAATGGAACTTGATCGTATACTTGAGAAGGAGAGGAACTTGACGACGGTCATGGGGGAAGGAACCCCAACAGT GACCCTTGGAAGCCAGTTATTTAGAGCAACCAGGTAA
AA sequence Show only first row Show all	>Potri.002G237600.1 pacid=42777172 polypeptide=Potri.002G237600.1.p locus=Potri.002G237600 ID=Potri.002G237600.1.v4.1 annot-version=v4.1 MSRTLAAILGGAAGVMALAGVVIFVLWCLYHKKTVSRTSETGSSETSIQVGRHAGIELSSQEARRFEMEELGLATKGFSEKNLIGLGKFGEVYKGLLNNG MIVAIKKRPGAPSPEFVDEVRYLSSIQHRNLVTLLGYCQENNLQFLVYEYISSGSVSNHLYGVGQTLEGKLEFKNRLPIALGAAKGLAHLHSQTPRLLHK NFKTANVLVDENFIAKVADAGLRNFLGRVDIAGPSTQVTADEIFLAPEVREFRQFSEKSDVFSFGVFLLELLSGKEATEPSPETSQNLVEWVQNTQDYTN FSSIVDHRLGSSFTAEGMEEFIQLMLQCVEPSSDRRPLMSYVVMELDRILEKERNLTTVMGEGTPTVTLGSQLFRATR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26700			Protein kinase superfamily pro...		Potri.002G237600 [exp]	0	1
AT2G01210			Leucine-rich repeat protein ki...		Potri.008G124300 [exp]	2.00	0.7626
AT2G15320			Leucine-rich repeat (LRR) fami...		Potri.009G097100 [exp]	3.87	0.6845
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.012G001100 [exp]	5.09	0.6219
AT3G14240			Subtilase family protein (.1)		Potri.001G163600 [exp]	9.89	0.6976
AT4G28600		NPGR2	no pollen germination related ...		Potri.008G169500 [exp]	11.74	0.6300	NPGR2.2
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	12.44	0.6639	Pt-CESA1.2
AT5G57100			Nucleotide/sugar transporter f...		Potri.006G072500 [exp]	12.48	0.6707
AT1G47380			Protein phosphatase 2C family ...		Potri.002G127300 [exp]	19.89	0.6367
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.001G367900 [exp]	21.00	0.6486
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098600 [exp]	21.77	0.6554

Compare expression of checked genes

Potri.002G237600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.