Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19340 814 / 0 Protein of unknown function (DUF3754) (.1) AT5G13940 603 / 0 aminopeptidases (.1) AT2G46915 96 / 8e-21 Protein of unknown function (DUF3754) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G144300 [exp] 891 / 0 AT3G19340 771 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144500 [exp] 692 / 0 AT3G19340 640 / 0.0 Protein of unknown function (DUF3754) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012581 [exp] 836 / 0 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10031975 [exp] 805 / 0 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041512 [exp] 802 / 0 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10035127 [exp] 796 / 0 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012584 [exp] 608 / 0 AT3G19340 589 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041510 [exp] 593 / 0 AT3G19340 579 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10004371 [exp] 137 / 2e-34 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12576 [poplar] [flax] DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence Show only first row Show all	>Potri.002G237700.1 pacid=42777444 polypeptide=Potri.002G237700.1.p locus=Potri.002G237700 ID=Potri.002G237700.1.v4.1 annot-version=v4.1 ATGGAGAGAAAGAAGAAGGAGATGATAAGATTGGAAAGGGAATCAGTGATTCCAATTCTGAAACCAAAGCTCATCATGACCTTGGCCAACCTCATTGAAC ATGGTTCTGACAGGACTGAGTTTCTGAAACTATGTAAGAGAGTTGAGTACACCATACGAGCTTGGTATCTTCTGCAGTTTGAGGATTTGATGCAATTGTA TTCGCTGTTTGACCCTGTGTCTGGGGCTAAGAAATTGGAGCAGCAGAATCTATCTCCTGAGGAAATTGATGTACTTGAACAGAATTTCTTGACTTACTTA TTTCAGGTGATGGATAAGAGCAACTTCAAGATAACAACCGATGAAGAGATTGATGTTGCACTCTCAGGACAATATCTTCTAAATCTTCCCATCAAAGTTG ACGAGTCCAAGCTTGACAAGAAACTTTTGAAGGCTTACTTTAATGATCATCCCCGTGAAAACCTCCCTGACTTTGCTGATAAGTACATTATCTTTCGGCG TGGGATTGGAATTGATAGAACAACAGATTATTTTTTCATGGAGAAAGTGGACATGCTGATTGGACGGTTTTGGGGATTTCTTTTAAGAGTAACCCGGCTA GATATTGTTTTTGCAAGAAAGTCAAGTGGACAGCGCAAGAATGATCAAAAGAAGGATGATGACCTTAACTCTGAAGCTGATCAGGATGATTTGTTTGTTG AAAGACTCCGACTGGAAAAAATGGATTTAAGTGTCAGCAATTTGCTGAGCAAGACTACAATACAGGAACCTACATTTGATAGGATCATAGTCGTTTACAG GCCGGCACCCACAAAATCAAAAACTGAACGGGGGGTATATGTGAAACATTTCAAAAACATTCCAATGGCTGATATGGAAATAGTTCTTCCTGAAAAGAAG AACCCTGGGTTAACTCCAATGGACTGGGTCAAGTTCCTGGTTTCTGCTGTAGTTGGGCTAGTTGCTGTGATTGGTTCAGTCGAAATGCCCAAGGCTGATC TTTGGGTCATTTTTGCTGTCCTTTCCACAGTTGTTGGTTACTGTGCTAAAACATACTTCACGTTCCAGCAAAATTTGGCTGCATATCAAAACTTGATTAC ACAGTCCATGTATGATAAACAACTAGATAGTGGAAGGGGTACTCTTCTTCACCTGTGTGATGATGTGATTCAACAGGAAGTCAAAGAGGTTATTATTTCC TTCTTTATATTGATGGAACAAGGCAAAGCTACTAGGCAGGATTTGGATTTGCGTTGCGAGGAACTGATTAAAGAAGAGTTTGGTGAGAGCTGTAATTTTG ATGTGGATGATGCAGTTGAAAAGTTAGAGAAGCTGGGCATTGTTGCTCGGGATTCTCTCGGACGATATTTCTGTGTTGGGCTAAAACGTGCTAATGAGAT TATTGGCACCACAACTGAAGAGCTCGTCCTCAAGGCAAAGCAGGGTTTTGCTAATTCTTGA
AA sequence Show only first row Show all	>Potri.002G237700.1 pacid=42777444 polypeptide=Potri.002G237700.1.p locus=Potri.002G237700 ID=Potri.002G237700.1.v4.1 annot-version=v4.1 MERKKKEMIRLERESVIPILKPKLIMTLANLIEHGSDRTEFLKLCKRVEYTIRAWYLLQFEDLMQLYSLFDPVSGAKKLEQQNLSPEEIDVLEQNFLTYL FQVMDKSNFKITTDEEIDVALSGQYLLNLPIKVDESKLDKKLLKAYFNDHPRENLPDFADKYIIFRRGIGIDRTTDYFFMEKVDMLIGRFWGFLLRVTRL DIVFARKSSGQRKNDQKKDDDLNSEADQDDLFVERLRLEKMDLSVSNLLSKTTIQEPTFDRIIVVYRPAPTKSKTERGVYVKHFKNIPMADMEIVLPEKK NPGLTPMDWVKFLVSAVVGLVAVIGSVEMPKADLWVIFAVLSTVVGYCAKTYFTFQQNLAAYQNLITQSMYDKQLDSGRGTLLHLCDDVIQQEVKEVIIS FFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVEKLEKLGIVARDSLGRYFCVGLKRANEIIGTTTEELVLKAKQGFANS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19340			Protein of unknown function (D...		Potri.002G237700 [exp]	0	1
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.001G392200 [exp]	3.00	0.8869	Pt-GF14.4
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.006G071500 [exp]	4.47	0.8136
AT2G46170			Reticulon family protein (.1.2...		Potri.002G165400 [exp]	8.12	0.8750
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	9.38	0.8597
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	9.48	0.8616
AT4G00752			UBX domain-containing protein ...		Potri.014G075600 [exp]	10.58	0.8343
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.003G038800 [exp]	13.49	0.8266	Pt-ATMSI4.2,NFC907
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.008G115300 [exp]	17.83	0.7834
AT4G21890			unknown protein		Potri.011G001800 [exp]	18.97	0.7715
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Potri.004G175600 [exp]	19.07	0.8012

Compare expression of checked genes

Potri.002G237700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.