Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13950 556 / 0 unknown protein AT3G45830 76 / 1e-13 unknown protein AT1G02290 71 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G144100 [exp] 1453 / 0 AT5G13950 406 / 4e-127 unknown protein Potri.009G026100 [exp] 67 / 7e-11 AT3G45830 1059 / 0.0 unknown protein Potri.014G109600 [exp] 66 / 8e-11 AT1G02290 229 / 3e-68 unknown protein Potri.001G233800 [exp] 66 / 1e-10 AT3G45830 1075 / 0.0 unknown protein Potri.002G184000 [exp] 63 / 6e-10 AT1G02290 231 / 2e-69 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031980 [exp] 470 / 4e-151 AT5G13950 438 / 2e-138 unknown protein Lus10035121 [exp] 363 / 6e-112 AT5G13950 292 / 1e-85 unknown protein Lus10018121 [exp] 65 / 2e-10 AT3G45830 803 / 0.0 unknown protein Lus10036145 [exp] 64 / 4e-10 AT3G45830 1034 / 0.0 unknown protein Lus10028606 [exp] 55 / 2e-07 AT1G02290 206 / 7e-61 unknown protein Lus10018907 [exp] 53 / 9e-07 AT1G02290 210 / 3e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G237800.1 pacid=42779075 polypeptide=Potri.002G237800.1.p locus=Potri.002G237800 ID=Potri.002G237800.1.v4.1 annot-version=v4.1 ATGGCGGCTGATCAACGGAGAAATCGGCTTAATGGGGCCAGCCTTGAGGGTTGTAGTTCCTGGGAGCCGTACAGAACTAAAAAGAAGAAGAAATCGAAGC ATGATTTGAATGCAAAATCTCTTATTTCTCTTGAGTGGGATGGCAACCGAAAAAAGGTTATTGCCAAAAGGGAGCAAATTGGCATCAGTCAGAGAGATTT AAGGCCATTTATTGATTCTGTTCCCCAGTATCATAATCTTTTAGCAGATGCTTTCCCTGTTCCGCGAGAAATTTTTGAGTTGAAGAATTTGACGGAGGTC CTCTCGAATGAGGTTTGGCAGACTCATTTATCAGAAAATGAGAGAAACTTTCTTATGCAGTTCCTACCTACAGGACTAGGTACAGTAGAAGTTGTGGAAG CATTGCTTTCTGGGGACAACTTTCGTTTTGGAAATCCATTACTTAGATGGGGTGCTTCACTTTGCTCTGGTAATCATCACCCTGATGCGGTTCTTTGTCA GGAACAGCATCTAAAGGCTGATAAAAAAGCATACTACTCCAACTTGCAGGATTATCATAATGACATGATAACATATTTGCAGAAGTTGAAGGATGCATGG GAAAGTAGCAAGGATCCAGAAAAGGAAGTTTTGCAGAAGATGTGGAGGAGGTCAAGAAGTGATGCAGATAAAAGAATTTCTCCTTGCGATAATGAGTCTA AATTTCATGACCTTGGGGAGAATTTGGTGGTGACATCTGAATCCAGCTCCTTAGTTGCAGAGGAGAAAGCATCTAGCAGTGATAATCAGAGTTCTCCTGC AACAAAGGGTGGAGAGTTTCAAAAGAGGATTTTTGAGAAAGGCTCCATGAAGGAGAAACGTAGAAAGCCATTGGTTGCTTCAGATCATGCAACTCCTGGA AAAGAAGACAAGATACACAAGCGCAATATCTACCGTAGCGATGGTGCCAAATACATGTCGTACTTAAAGATAAGCAAGAAGCAGCACCAACTTGTCAAGA GCATGAAGCAATCCGGTAAAAGCATTCAATCTAAGTCTCTTAACTGTGTGTTAGGTGACCTTGATACTTTGCATGTACAACCATATGAAGAATTTGTGAA AGAGGAACATAAGAAGTTGCTGGAGCATTGGATGCAATTGGCACACAAAGATCTTCCTGCAGCATATGCGATCTGGAGACAAAGACAGTTTCAGAGACAG GAGATAACCAAATCTATGGAGCAAGAGATGAAAGGCAAATTAAAATATCCAGTGGAGTATCTGGAGAAGGATGGCCATGAGACTGTGCTTCAGGATCAGA GTGATCAAGGTGCAAACAAACATGAAACCAGCTTGGAGGATATGCAAGAACAGAACCATGAGATCATGCTTCAGGGTCAGAATGATCATGGAACAAGATA CCAAGAATCTGACAATTCTGAGGATGGCATTTCTGGTTCTATCTCCCCACAGGATCAGTCTCCACAGCATATTTCCTCCCTTTCTGTCGGCCAGGATCTT AACCCTGTAGATATGAATATGGAAAATAATCATGTCCATTCAAACTCAAATTCAGATGAAGCTTCTCCACATGTATCTGAGTACTCAGGCAGCATGCATG CTACAGATACTTCCATCAATCAGGGAATCCCTATATCTTCTTCTGGTGGAGATGTCTGGTCAGCAGCTAGCATACCTAATTCATATTATGATTCTAGTGC AAACCATGAATACACATCTACTGGTGGATTGTCACTGCCACATCAAGTTAATGAAGAGCAACGTTCTCAATTAATTGATTTGGGATCTAAAGTGCATGAA GAAGATGCTGGGAAAGATTTGTTGCACGGACAATCTGATGATGGTTCTTTCAGCTCTTACCCAAACCATGATCGCAGTGGATTGCTTCAATCTTTGTTCA AAAGTCAGGCAATGTTACCCTACCATAGTGAACAAAAACAAAACGGGCTAGATTTTCAATCACCAAATGGTGTTATAATGCAAGATGGCCAGTTTACAGG AAATCTCCAGGGGCAGCTTCAGCCTTTGCTGTCACTTGAACCGGGACAGAAGAGGCACACTGAGGATTACTTGCAACAAAATATAACAGAGGACATTTAT TCCGAGGGGGGAGGGTTCTTGATTCCAAGACAAGGAAATGCACCACCAGTCATTCTGCAAGACTGGAATGTTAATCCTGTTCGTATGCCAGCACGGCTCC AATCCCATCTAAATGATGGTGGATTGCTAACTCAGAACTGGTTCTCTGGGGAGCATCAAGTTTGCAGGGACTGGACTGGTGCAGGTGGTCCTAGTGTCTC AAACCAGAGCATTGGAAGTAATGCAGATCAAAGCCTATTTAGTGTTCTATCACAGTGTAACCAACTGCATACGAGAAACCCCATTAACCAATTGCGTTCA GGTAGCCCTGTCAATCAGCGTTCAAGTGGTCCCTTTGATTTAGTGGGGTCTGCTGAGCAGTTTGTGTTGCCGAGGAACTATGGTATGGTGAGTGGGGTTA CTCCCAGGATCAGTAATACTTTACCACAAGCAGTTCACCCACTTGACTACTTTGGTGGGCGTGACACTGCTAGTTCCCTGATGCCTGATGACATGGGATG GATGACTTTGCCACACAATTCTGCTTTACATGATCCAGTGGGAAAACCGCACTTAAGGTCATGGAATCAATGA
AA sequence Show only first row Show all	>Potri.002G237800.1 pacid=42779075 polypeptide=Potri.002G237800.1.p locus=Potri.002G237800 ID=Potri.002G237800.1.v4.1 annot-version=v4.1 MAADQRRNRLNGASLEGCSSWEPYRTKKKKKSKHDLNAKSLISLEWDGNRKKVIAKREQIGISQRDLRPFIDSVPQYHNLLADAFPVPREIFELKNLTEV LSNEVWQTHLSENERNFLMQFLPTGLGTVEVVEALLSGDNFRFGNPLLRWGASLCSGNHHPDAVLCQEQHLKADKKAYYSNLQDYHNDMITYLQKLKDAW ESSKDPEKEVLQKMWRRSRSDADKRISPCDNESKFHDLGENLVVTSESSSLVAEEKASSSDNQSSPATKGGEFQKRIFEKGSMKEKRRKPLVASDHATPG KEDKIHKRNIYRSDGAKYMSYLKISKKQHQLVKSMKQSGKSIQSKSLNCVLGDLDTLHVQPYEEFVKEEHKKLLEHWMQLAHKDLPAAYAIWRQRQFQRQ EITKSMEQEMKGKLKYPVEYLEKDGHETVLQDQSDQGANKHETSLEDMQEQNHEIMLQGQNDHGTRYQESDNSEDGISGSISPQDQSPQHISSLSVGQDL NPVDMNMENNHVHSNSNSDEASPHVSEYSGSMHATDTSINQGIPISSSGGDVWSAASIPNSYYDSSANHEYTSTGGLSLPHQVNEEQRSQLIDLGSKVHE EDAGKDLLHGQSDDGSFSSYPNHDRSGLLQSLFKSQAMLPYHSEQKQNGLDFQSPNGVIMQDGQFTGNLQGQLQPLLSLEPGQKRHTEDYLQQNITEDIY SEGGGFLIPRQGNAPPVILQDWNVNPVRMPARLQSHLNDGGLLTQNWFSGEHQVCRDWTGAGGPSVSNQSIGSNADQSLFSVLSQCNQLHTRNPINQLRS GSPVNQRSSGPFDLVGSAEQFVLPRNYGMVSGVTPRISNTLPQAVHPLDYFGGRDTASSLMPDDMGWMTLPHNSALHDPVGKPHLRSWNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13950			unknown protein		Potri.002G237800 [exp]	0	1
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Potri.002G149800 [exp]	2.82	0.9082
AT5G25520			SPOC domain / Transcription el...		Potri.006G246800 [exp]	2.82	0.9128
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	3.00	0.9083
AT5G45190			Cyclin family protein (.1.2)		Potri.005G097400 [exp]	3.16	0.9073
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	3.31	0.9132
AT3G50910			unknown protein		Potri.005G120600 [exp]	5.65	0.9052
AT2G47210	MYB		myb-like transcription factor ...		Potri.014G117400 [exp]	5.83	0.8946
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	6.48	0.9058
AT3G62010			unknown protein		Potri.002G184400 [exp]	7.07	0.8864
AT5G24810			ABC1 family protein (.1.2)		Potri.018G000101 [exp]	7.21	0.8971

Compare expression of checked genes

Potri.002G237800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.