Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13960 709 / 0 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G22740 317 / 4e-97 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 310 / 1e-94 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT1G73100 297 / 5e-91 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G04940 286 / 8e-87 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT4G13460 266 / 1e-79 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 259 / 6e-77 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 223 / 3e-63 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 196 / 3e-53 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47150 117 / 1e-28 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143900 [exp] 1148 / 0 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 594 / 0 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 328 / 1e-99 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.001G036800 [exp] 291 / 1e-88 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 288 / 2e-87 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.006G027600 [exp] 275 / 1e-82 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 275 / 1e-82 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.010G064300 [exp] 275 / 2e-82 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 266 / 3e-79 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041515 [exp] 820 / 0 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 810 / 0 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 760 / 0 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001798 [exp] 448 / 2e-149 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10002571 [exp] 438 / 3e-146 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 308 / 6e-94 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 308 / 5e-92 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 301 / 1e-89 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10008681 [exp] 291 / 9e-89 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 283 / 1e-85 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain CL0178 [poplar] [flax] PF05033 [poplar] [flax] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Potri.002G237950.1 pacid=42777496 polypeptide=Potri.002G237950.1.p locus=Potri.002G237950 ID=Potri.002G237950.1.v4.1 annot-version=v4.1 ATGGTGGAGCAATGCGTGAGCAATGGTCCGGAAAGGAAAACAGTAGCGAAAAATGGGAGAAAAGAGAGAAAAAAGACAGAGACACAGAGGAGGACGAGTG ATAGAATCAAGAGCAGGCAGAGAGAGGAGAAGGAGCAATTGGTGAGAAAGAGAGTGCAGATATTGGATGGGCAAGAAGATAAAGGAAACCCTAGAAAGAG ACCGAATGTCAATGCGACTGAAGATGAGAAGGAGAAGGAGGTTGCGATGGCTGAAAGGATGGTAAATCAAGTTTTGGGGTCAACTGAAGTGCAAAAGGAG GTGACTTTAGGTGATGCTAGTGGTGCGGGTGGTGCGTTGCCTGATAAAAGTGCTACTGTTAAAGTTAAGGATACTTTAAGGCTGTTTAACAAATTTTATC TCCAGTTAGTGCAGGAAGAAGAGTTGAGGTGTGCGAAAGCAAAAGTTGATAAAAAGGTCTCCCAAGGTTCAAAAAAATTCCTCAAAGGTTCGAAAAAATC AGCTGATAAATCCAAGAAAGAAAAACCATCTGAAGATGGTGACAAGAAAAAAGCCAAGCGTCCTGATTTAAAGGCAATAACTAAGATGTTTGAAGCTAAT GCTACAATGTATCCTGAGAAAAGAATTGGTGATCTTCCAGGTATCAGTGTTGGGCACCGTTTCTATTCTAGGGCTGAAATGGTTGCTGTTGGCTTTCATA GCCACTGGCTGAATGGAATTGATTATATGGGGCAGTCCTACAGGAAGGGGGTGTACCATAATTATACGTTCCCACTTGCCGTGGCCATTGTTATATCGGG GATGTATGAGGATGACCTGGATAATGCCGAGGATGTTATCTATACTGGCCAAGGTGGGCATGATTTAACTGGAAATAAGCGTCAAATTCGTGACCAAAAG TTGGAGCGCGGTAATTTGGCATTGAAGAATTGTGTGGAGCAATGTGTTCCTGTACGAGTTGTTCGTGGCCATGAATGTGCCAGCAGCTACTGTGGCAGAG TTTACACCTATGATGGCTTGTACAAGGTTGTTCAATACTGGGCAGAGAAAGGTTTATCTGGATTTACTGTGTTTAAGTATCGACTGAGGCGGATGGAAGG GCAACCAATTCTGACCACCAACCAGGTTCAATTCAGCTATGGACGTGTTCCCCAATCTGTTGCTGAAATACGAGGGTTGGTGTGTGAGGATATTAGTGGA GGTCAAGAGGATGTCCCAATTCCAGCTACCAATTTGGTTGATGATCCGCCTGTTGCTCCATCAGGTTATACCTACTGCAAGTCTCTTCAAATTGCCAAAA ATGTGAAGCTGCCTGCAAATGTGAGTGGATGCAACTGCCAAGGGACTTGTGTGGATCCAAGGACTTGTGCTTGTGCAAAGCTTAATGGCTCTGATTTTCC ATATGTGCAAATTAATGGTGGCAGGTTAATCGAAGCCAGGGCAGTTGTTTTCGAATGTGGCCCAAGTTGTGGATGTGGACCTGGTTGTGTAAACCGGACA TCTCAACGAGGCATCAAGCATCGTCTTGAGGTTTTCCGTACTCCTAAGAAAGGATGGGCTGTTAGATCGTGGGACTTTATACCTTCTGGGGCGCCTGTTT GTGAGTACATAGGGGCGCTTGTGAGAACTGAAGACACAGATCATGTCTGTGAGAACAATTATATTTTTGACATTGACTGCTTGCAAACAATGAGGGGGCT TGGTGGAAGAGAGAGGCGACTAGGAGATGTATCAGTGTCAGCAATTAACAGCTTTGATGGAGATGATCAGAAGTCTGAAAGTGTTCCAGAGTTTTGTATT GATGCAGGTTCCACTGGAAATATTGCCAGGTTCATCAATCATAGTTGTGAGCCCAATCTCTTTGTGCAATGTGTCCTGAGCTCGCATCACGATGTCAAAC TTGCTCGGGTGATGCTGTTTGCAGCGGATAACATACCTCCTATGCAGGAACTTACTTATGACTATGGCTATGCCCTGGATAGCGTCTCTGGCCCCAGTGG AAAAATAAAACAGATGCCGTGCTACTGTGGTGCAGCAGATTGTAGGAAGCGCTTGTTCTAG
AA sequence Show only first row Show all	>Potri.002G237950.1 pacid=42777496 polypeptide=Potri.002G237950.1.p locus=Potri.002G237950 ID=Potri.002G237950.1.v4.1 annot-version=v4.1 MVEQCVSNGPERKTVAKNGRKERKKTETQRRTSDRIKSRQREEKEQLVRKRVQILDGQEDKGNPRKRPNVNATEDEKEKEVAMAERMVNQVLGSTEVQKE VTLGDASGAGGALPDKSATVKVKDTLRLFNKFYLQLVQEEELRCAKAKVDKKVSQGSKKFLKGSKKSADKSKKEKPSEDGDKKKAKRPDLKAITKMFEAN ATMYPEKRIGDLPGISVGHRFYSRAEMVAVGFHSHWLNGIDYMGQSYRKGVYHNYTFPLAVAIVISGMYEDDLDNAEDVIYTGQGGHDLTGNKRQIRDQK LERGNLALKNCVEQCVPVRVVRGHECASSYCGRVYTYDGLYKVVQYWAEKGLSGFTVFKYRLRRMEGQPILTTNQVQFSYGRVPQSVAEIRGLVCEDISG GQEDVPIPATNLVDDPPVAPSGYTYCKSLQIAKNVKLPANVSGCNCQGTCVDPRTCACAKLNGSDFPYVQINGGRLIEARAVVFECGPSCGCGPGCVNRT SQRGIKHRLEVFRTPKKGWAVRSWDFIPSGAPVCEYIGALVRTEDTDHVCENNYIFDIDCLQTMRGLGGRERRLGDVSVSAINSFDGDDQKSESVPEFCI DAGSTGNIARFINHSCEPNLFVQCVLSSHHDVKLARVMLFAADNIPPMQELTYDYGYALDSVSGPSGKIKQMPCYCGAADCRKRLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.002G237950 [exp]	0	1
AT4G34040			RING/U-box superfamily protein...		Potri.001G304900 [exp]	5.91	0.7568
AT5G05800			unknown protein		Potri.014G091925 [exp]	6.00	0.8128
AT1G10390			Nucleoporin autopeptidase (.1....		Potri.011G148800 [exp]	7.34	0.7945
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Potri.013G151600 [exp]	8.94	0.7943	CDC48.4
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.004G090200 [exp]	11.40	0.8154
					Potri.007G113400 [exp]	11.48	0.8036
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	13.96	0.8038
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Potri.017G056700 [exp]	14.17	0.8111
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	14.28	0.8075
AT4G20020			unknown protein		Potri.004G218650 [exp]	20.71	0.7887

Compare expression of checked genes

Potri.002G237950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.