Plant FIBer expression Database

Potri.002G238100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13970 205 / 1e-61 unknown protein
AT5G13310 94 / 7e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G143800
[exp]
577 / 0 AT5G13970 217 / 3e-66 unknown protein
Potri.003G163100
[exp]
183 / 6e-53 AT5G13310 129 / 1e-33 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035116
[exp]
260 / 1e-82 AT5G13970 211 / 4e-64 unknown protein
Lus10031983
[exp]
212 / 2e-62 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15264 TSSC4 Tumour suppressing sub-chromosomal transferable candidate 4
Representative CDS sequence
>Potri.002G238100.1 pacid=42777865 polypeptide=Potri.002G238100.1.p locus=Potri.002G238100 ID=Potri.002G238100.1.v4.1 annot-version=v4.1
ATGGAAGATAGTTTCAGTGCCCGAGTGGAGAAAGCCTTCGGTTCCCTCTCTTCTTCAACAGTACAAACCCAGCAACCCTCTTCCTCCTCCTCCTCTATAA
GCTCTCTATGGCGTCTCACTGACGAAGAAATCGAGCGAAACCAATGGATTCGAGACCGCAAGGAGGACAGCCCTGAAATCGAAACCCAACCCCAACCGTA
CTTTAATCCAGAAAGACCCCACGATATGGATTTCAAGTCTGATGAGATCGAAAGAGACCTTGATGATCTAGACGACGGCGAGGAGGAGTCACGCGCCTCG
AAACTTAAACCCGAAGATTATAACGATGAAGAATGGGACATCAAGAAATCTATTGGCCTGGATTGTACTCTTGATTATGAGGAAGAGGAAGATCATTATG
ACAAAGTAGCTGTTGGCAGGGAAAAGGCTGGAGATGAACGCCTTTATGTGACAGCAATGGAAGATTATGGTATAGATATTGATTCTGGAAATGAGATTCC
TAGTTCATTTGAGGATGTTGCTAGGGATCCGCGTGCTAATCACCTTGCTGCAAAAATTAGGCTAAAGGAAGATGCAGAAGCAGCTAAAAAGATGGATTCT
TTGAGGGTTACCGTAAAGGAAAATACTAGTGTATCTGATGATGGTAATCTGAAATCCATTTTGAAGAGGAAGAAGGATTTTCAATTGGATTCCAAGACGA
TCGAGAATGATTTGGATTCTAAGTTACGAAAGCGTGTCCGGTTTGACCCGGAATGCAAAGACGGTAATGATGAAGAGTATGATGGAGTTGAAGACACGCA
GATGGAAACTACTGATTCAACAGAAGAAACCATAGTGTATCATTTTTCTCCAGATTATCCTTCTGGAATTCCGGATCACATGCGAAATCCTTCGAAATAT
ACACACTATACTTTTGATTCATCAACTGATGTAGATGAAGAATCAAACCGAGGAGCGTATATGGACTTCCTCAAGATGCTGCAGCGAGCAAAGAATGCAG
AATTACATCCAGATGACGATCCTGTTGATCTTTCAAAACCATTCACCTTCATACCAAAAAAGAAAACTGGTGCTGTTACATTGACTGATAACTGCATTGA
TTCTAAACAAAACTGGGATGATGCCAGTGAAGACTTCAAGCTTAGGAGAGGGGTGCCTCTTAGGATTGCAGCCGGCGATGACCTTGATACTGAAACCTGT
GCCATGGAGGAAGATAAACCAGAAACAGCAGCTGATAGGACTAGTTCCCAGAGACCAGACCGTCAGTATAGGACAAAGGCCAAGTTGGAGACATGA
AA sequence
>Potri.002G238100.1 pacid=42777865 polypeptide=Potri.002G238100.1.p locus=Potri.002G238100 ID=Potri.002G238100.1.v4.1 annot-version=v4.1
MEDSFSARVEKAFGSLSSSTVQTQQPSSSSSSISSLWRLTDEEIERNQWIRDRKEDSPEIETQPQPYFNPERPHDMDFKSDEIERDLDDLDDGEEESRAS
KLKPEDYNDEEWDIKKSIGLDCTLDYEEEEDHYDKVAVGREKAGDERLYVTAMEDYGIDIDSGNEIPSSFEDVARDPRANHLAAKIRLKEDAEAAKKMDS
LRVTVKENTSVSDDGNLKSILKRKKDFQLDSKTIENDLDSKLRKRVRFDPECKDGNDEEYDGVEDTQMETTDSTEETIVYHFSPDYPSGIPDHMRNPSKY
THYTFDSSTDVDEESNRGAYMDFLKMLQRAKNAELHPDDDPVDLSKPFTFIPKKKTGAVTLTDNCIDSKQNWDDASEDFKLRRGVPLRIAAGDDLDTETC
AMEEDKPETAADRTSSQRPDRQYRTKAKLET

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13970 unknown protein Potri.002G238100
[exp]
0 1
AT5G40400 Pentatricopeptide repeat (PPR)... Potri.017G071600
[exp]
1.41 0.9194
AT1G58470 XF41, ATRBP1 RNA-binding protein 1 (.1) Potri.002G115000
[exp]
2.82 0.8922
AT2G43250 unknown protein Potri.007G124700
[exp]
2.82 0.8952
AT2G02370 SNARE associated Golgi protein... Potri.001G078700
[exp]
4.24 0.8871
AT1G77360 Tetratricopeptide repeat (TPR)... Potri.017G126600
[exp]
4.58 0.8813
AT5G24650 Mitochondrial import inner mem... Potri.015G000600
[exp]
7.07 0.8881
AT2G44410 RING/U-box superfamily protein... Potri.009G023300
[exp]
11.48 0.8743
AT3G63390 unknown protein Potri.002G047400
[exp]
11.83 0.8756
AT3G11810 unknown protein Potri.008G091600
[exp]
12.72 0.8615
AT5G22510 INV-E, At-A/N-I... Arabidopsis alkaline/neutral i... Potri.004G186500
[exp]
13.63 0.8923

Potri.002G238100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.