Plant FIBer expression Database

Potri.002G238300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58220 360 / 1e-124 ALNS, TTL allantoin synthase, transthyretin-like protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025696
[exp]
467 / 1e-165 AT5G58220 376 / 7e-130 allantoin synthase, transthyretin-like protein (.1.2.3)
Lus10035966
[exp]
449 / 3e-159 AT5G58220 369 / 6e-128 allantoin synthase, transthyretin-like protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09349 OHCU_decarbox OHCU decarboxylase
Representative CDS sequence
>Potri.002G238300.4 pacid=42778947 polypeptide=Potri.002G238300.4.p locus=Potri.002G238300 ID=Potri.002G238300.4.v4.1 annot-version=v4.1
ATGGAAAGGTATGAAGAGGAGGAGTATTTGGCATGCTGTGGAAGCACCCAATTCGCAAAAGAAATGGTGAAGGCTTCTCCTTTTGCTTCTGTCCAAGAAG
CCGTCTCTGCTGCCAGAGACATCTGGTTCAACAAGGTTGATGTGAATGGTTGGTTGGAAGCATTCTCTGCTCATCCTCAGATTGGTCAGTCCCCTTCTCC
CGATCACATTGCTGCTGCTGCTCAGTGGAGTAAGGGAGAGCAATCTACTGCTTTAGCTACTGGTACCACTTCCACCTTACAGGAACTATCTGACTGGAAT
GCTCGATATAGACACAAGTTTGGATTTATTTTTCTTATTTGTGCATCTGGACGCTCCACTGCTGAAATACTTGCTGACTTGAAGAAACGATATCCAAACA
GGCCCATAGTTGAGTTTGAGATCGCAGCCCAGGAACAGATGAAAGTTACAGAACTACGTCTTGCGAAGCTCTTTTCAAGTAAAATAAAATCTACTTCAAA
AGGCAATGAACATGCCACAGTTTCTGTAAAGAAAGCAGAAGAAGATCGTGTGAGTATCATTAGCGGGCATTTAACCACAACTAGCGAGTCTTCATCTGGA
AAGGCATCTCAAATTTCAACTCGCACTCGTCCACCAATTACAACCCATGTCTTGGATGTTTCTCGAGGCTCTCCAGCTGCCGGTGTTGAGGTATGCCTAG
AAATATGGAAGGGAACTCAACCTCGTCCATTGTTTGGTGAGCCAGATGTAGGTGGTTGGGTATTTCAAGGGTCTTCAACCACAGATGCTGATGGGCGAAG
TGGTCAACTGATGAACATTGTTGATGTTGTGAACCCAGGAATATACAGAATAAGTTTTAACACAGGTAAATACTGTCCTTCTGGGTTCTTTCCCTGTGTT
TCTATTGTGTTTGAAATCAAAGAGTCGCAGAACCGGGAACATTTTCATGTTCCCCTTCTGTTTTCCCCCTTTTCATTTACTACTTACCGAGGTAGCTAG
AA sequence
>Potri.002G238300.4 pacid=42778947 polypeptide=Potri.002G238300.4.p locus=Potri.002G238300 ID=Potri.002G238300.4.v4.1 annot-version=v4.1
MERYEEEEYLACCGSTQFAKEMVKASPFASVQEAVSAARDIWFNKVDVNGWLEAFSAHPQIGQSPSPDHIAAAAQWSKGEQSTALATGTTSTLQELSDWN
ARYRHKFGFIFLICASGRSTAEILADLKKRYPNRPIVEFEIAAQEQMKVTELRLAKLFSSKIKSTSKGNEHATVSVKKAEEDRVSIISGHLTTTSESSSG
KASQISTRTRPPITTHVLDVSRGSPAAGVEVCLEIWKGTQPRPLFGEPDVGGWVFQGSSTTDADGRSGQLMNIVDVVNPGIYRISFNTGKYCPSGFFPCV
SIVFEIKESQNREHFHVPLLFSPFSFTTYRGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G58220 ALNS, TTL allantoin synthase, transthyre... Potri.002G238300
[exp]
0 1
AT2G05630 ATG8D Ubiquitin-like superfamily pro... Potri.014G153800
[exp]
1.00 0.8306
AT4G34960 Cyclophilin-like peptidyl-prol... Potri.009G132800
[exp]
8.83 0.7539
AT1G02305 Cysteine proteinases superfami... Potri.002G184300
[exp]
10.67 0.7437
AT3G57810 Cysteine proteinases superfami... Potri.016G050900
[exp]
23.57 0.7260
AT5G48570 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-... Potri.006G033400
[exp]
47.96 0.7214
AT1G24040 Acyl-CoA N-acyltransferases (N... Potri.008G146000
[exp]
48.90 0.7608
AT5G27280 Zim17-type zinc finger protein... Potri.002G015900
[exp]
57.34 0.7696
AT5G62740 AtHIR4, ATHIR1 hypersensitive induced reactio... Potri.017G078000
[exp]
66.81 0.7614
AT1G06690 NAD(P)-linked oxidoreductase s... Potri.005G207000
[exp]
82.21 0.7526
AT4G21210 ATRP1 PPDK regulatory protein (.1.2) Potri.004G022900
[exp]
96.94 0.7541

Potri.002G238300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.