Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07490 248 / 9e-86 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT1G05990 223 / 6e-76 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT2G43290 209 / 2e-69 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT4G12860 206 / 4e-69 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT4G03290 194 / 1e-64 EF hand calcium-binding protein family (.1) AT3G59440 194 / 9e-64 Calcium-binding EF-hand family protein (.1) AT5G37770 115 / 3e-33 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G18210 111 / 1e-31 Calcium-binding EF-hand family protein (.1.2) AT1G73630 108 / 8e-31 EF hand calcium-binding protein family (.1) AT1G24620 105 / 3e-29 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029700 [exp] 231 / 4e-78 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 230 / 5e-78 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.018G127100 [exp] 144 / 1e-43 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G065900 [exp] 143 / 2e-43 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.012G048200 [exp] 117 / 3e-34 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.015G039500 [exp] 117 / 6e-34 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G126200 [exp] 114 / 4e-33 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.004G089400 [exp] 111 / 8e-32 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.008G134300 [exp] 109 / 1e-30 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009564 [exp] 244 / 2e-84 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10027701 [exp] 154 / 1e-47 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10038088 [exp] 153 / 4e-47 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10006644 [exp] 152 / 9e-47 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10039986 [exp] 136 / 4e-41 AT3G07490 132 / 3e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10020389 [exp] 132 / 7e-41 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10018012 [exp] 121 / 2e-35 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 111 / 2e-31 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 110 / 4e-31 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 107 / 4e-29 AT1G66400 147 / 2e-44 calmodulin like 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.002G239100.1 pacid=42779313 polypeptide=Potri.002G239100.1.p locus=Potri.002G239100 ID=Potri.002G239100.1.v4.1 annot-version=v4.1 ATGGATCCGGCAGAGCTACGTCGGGTATTTCAAATGTTTGATAAGAATGGAGATGGGCAGATCACAAAGAAGGAACTAAGTGACTCGCTAAAAAACTTGG GTATCTATATACCCGATAAGGATTTGATCCAAATGATTGAGAAGATAGATGTCAATGGAGATGGTTACGTAGACATTGAAGAGTTCGGGGCATTGTATCA AACGATAATGGACGAGAGGGACGAGGAGGAGGACATGAGAGAAGCATTCAACGTGTTCGATCAAAATGGAGATGGTTTTATCACAGTGGAGGAGTTGAAG TCAGTTTTGTCATCCTTGGGGCTAAAACAGGGAAGAACTTTAGAGGATTGCAAGAGAATGATAAAAAAGGTGGATGTGGATGGAGATGGCATGGTTAACT TCAGGGAGTTCAAGCAAATGATGAAAGGAGGTGGATTTGCTGCCCTAGGTTCAAGTTGA
AA sequence Show only first row Show all	>Potri.002G239100.1 pacid=42779313 polypeptide=Potri.002G239100.1.p locus=Potri.002G239100 ID=Potri.002G239100.1.v4.1 annot-version=v4.1 MDPAELRRVFQMFDKNGDGQITKKELSDSLKNLGIYIPDKDLIQMIEKIDVNGDGYVDIEEFGALYQTIMDERDEEEDMREAFNVFDQNGDGFITVEELK SVLSSLGLKQGRTLEDCKRMIKKVDVDGDGMVNFREFKQMMKGGGFAALGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.002G239100 [exp]	0	1
AT5G17910			unknown protein		Potri.019G044500 [exp]	4.58	0.8476
AT1G64320			myosin heavy chain-related (.1...		Potri.001G094332 [exp]	5.29	0.8170
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	5.91	0.8024
					Potri.010G242200 [exp]	12.00	0.7975
AT3G19620			Glycosyl hydrolase family prot...		Potri.001G294700 [exp]	15.58	0.7688
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Potri.010G062520 [exp]	17.74	0.7432
AT5G10070			RNase L inhibitor protein-rela...		Potri.007G087000 [exp]	26.45	0.7729
AT3G15390		SDE5	silencing defective 5 (.1.2)		Potri.001G401900 [exp]	28.53	0.7426
AT3G53270			Small nuclear RNA activating c...		Potri.004G126720 [exp]	31.46	0.7564
AT1G55750			BSD domain (BTF2-like transcri...		Potri.005G061432 [exp]	32.24	0.7478

Compare expression of checked genes

Potri.002G239100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.